SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55681,55681 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55681 - Class II aaRS and biotin synthetases
55681 - Class II aaRS and biotin synthetases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Drosophila_suzukii 0
Megaselia_scalaris_22 0
Sarcoptes_scabiei 0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Caenorhabditis_remanei_ 0
Schistosoma_mansoni_ 0
Acropora_digitifera_v1.0 0
Amphimedon_queenslandica 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Microbotryum_violaceum_22 0
Coprinopsis_cinerea_okayama7_130_v3 0
Hebeloma_cylindrosporum_h7_v2.0 0
Gloeophyllum_trabeumv1.0 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Catenaria_anguillulae_PL171_v1.0 0
Pinus_taeda   (Loblolly pine)   1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Glycine_max_v109   (Soybean)   0
Malus_domestica_v196   (Apple)   1
Triticum_urartu_22 0
Aegilops_tauschii_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Setaria_italica_v164   (Foxtail millet)   0
Sorghum_bicolor_   (Sorghum)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Bigelowiella_natans_CCMP2755_22 0
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 0
Phytophthora_capsici_ 0
Perkinsus_marinus_ATCC_50983_ 0
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Corynebacterium_aurimucosum_ATCC_700975 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Acidobacterium_capsulatum_ATCC_51196 1
Thiomonas_arsenitoxydans 0
Thiomonas_intermedia_K12 0
Wolbachia_sp._wRi 1

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Wolbachia_endosymbiont_of_Drosophila_melanogaster 0
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 0
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 0
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 0

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Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Felis_catus_69   (Domestic cat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 0
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 6
NCBI_2017_08_genome 166
Uniprot_2018_03_genome 224

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