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Domain combinations for 55781,55785,55073 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55781 - GAF domain-like
55785 - PYP-like sensor domain (PAS domain)
55073 - Nucleotide cyclase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Spizellomyces_punctatus_DAOM_BR117_ 0
Hyaloperonospora_arabidopsidis_22 0
Thermobaculum_terrenum_ATCC_BAA-798 0
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Thermosynechococcus_sp._NK55 0
Thermosynechococcus_elongatus_BP-1 0
Synechococcus_sp._PCC_6312 0
Microcoleus_sp._PCC_7113 0
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 0
Halothece_sp._PCC_7418 0
Rivularia_sp._PCC_7116 0
Calothrix_sp._PCC_7507 0
Anabaena_variabilis_ATCC_29413 0
'Nostoc_azollae'_0708 0
Nostoc_sp._PCC_7107 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 0
Nostoc_sp._PCC_7524 0
Ilumatobacter_coccineus 0
Modestobacter_marinus 1
Blastococcus_saxobsidens_DD2 1
Streptomyces_scabiei_87.22 0
Kribbella_flavida_DSM_17836 1
Gordonia_polyisoprenivorans_VH2 1
Mycobacterium_gilvum_PYR-GCK 0
Mycobacterium_chubuense_NBB4 1
Anaerolinea_thermophila_UNI-1 0
Thermomicrobium_roseum_DSM_5159 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_deserti_VCD115 0
Deinococcus_maricopensis_DSM_21211 0
Marinithermus_hydrothermalis_DSM_14884 0
Meiothermus_ruber_DSM_1279 0
Selenomonas_sputigena_ATCC_35185 0
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfitobacterium_hafniense_Y51 0
Desulfitobacterium_dehalogenans_ATCC_51507 0
Acetobacterium_woodii_DSM_1030 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Thermodesulfobium_narugense_DSM_14796 0
Halanaerobium_hydrogeniformans 0
Halanaerobium_praevalens_DSM_2228 0
Bacillus_selenitireducens_MLS10 0
Lysinibacillus_sphaericus_C3-41 0
Halobacillus_halophilus_DSM_2266 0
Haliscomenobacter_hydrossis_DSM_1100 0
Sphaerochaeta_pleomorpha_str._Grapes 0
Spirochaeta_africana_DSM_8902 1
Thermodesulfobacterium_sp._OPB45 0
Deferribacter_desulfuricans_SSM1 0
Sulfurihydrogenibium_sp._YO3AOP1 0
Sulfurihydrogenibium_azorense_Az-Fu1 0
Hydrogenobaculum_sp._SN 0
Hydrogenobaculum_sp._HO 0
Hydrogenobaculum_sp._Y04AAS1 0
Aquifex_aeolicus_VF5 0
Hydrogenobacter_thermophilus_TK-6 0
Dictyoglomus_turgidum_DSM_6724 0
Dictyoglomus_thermophilum_H-6-12 0
Candidatus_Chloracidobacterium_thermophilum_B 0
Granulicella_tundricola_MP5ACTX9 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_roseus_DSM_18391 1
Leptospirillum_ferrooxidans_C2-3 0
Acidithiobacillus_ferrivorans_SS3 0
Acidithiobacillus_caldus_SM-1 0
Acidithiobacillus_ferrooxidans_ATCC_53993 0
Nautilia_profundicola_AmH 0
Arcobacter_sp._L 0
Arcobacter_butzleri_RM4018 0
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Sulfuricurvum_kujiense_DSM_16994 1
Sulfurimonas_denitrificans_DSM_1251 0
Nitratiruptor_sp._SB155-2 0
Sulfurovum_sp._NBC37-1 0
Desulfurivibrio_alkaliphilus_AHT2 0
Desulfobulbus_propionicus_DSM_2032 1
Desulfohalobium_retbaense_DSM_5692 0
Desulfovibrio_alaskensis_G20 0
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Desulfovibrio_salexigens_DSM_2638 1
Hippea_maritima_DSM_10411 0
Geobacter_daltonii_FRC-32 0
Geobacter_lovleyi_SZ 0
Geobacter_sulfurreducens_KN400 0
Thauera_sp._MZ1T 0
Azoarcus_sp._KH32C 0
Azoarcus_sp._BH72 0
Aromatoleum_aromaticum_EbN1 0
Dechlorosoma_suillum_PS 0
Laribacter_hongkongensis_HLHK9 0
Methylibium_petroleiphilum_PM1 1
Thiomonas_arsenitoxydans 0
Thiomonas_intermedia_K12 0
Leptothrix_cholodnii_SP-6 0
Burkholderia_phytofirmans_PsJN 0
Burkholderia_phymatum_STM815 0
Burkholderia_xenovorans_LB400 0
Ralstonia_eutropha_JMP134 0
Ralstonia_pickettii_12D 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._CCGE1002 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_multivorans_ATCC_17616 0
Burkholderia_vietnamiensis_G4 0
Alicycliphilus_denitrificans_K601 0
Rhodoferax_ferrireducens_T118 0
Acidovorax_ebreus_TPSY 0
Acidovorax_sp._KKS102 0
Acidovorax_sp._JS42 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Herminiimonas_arsenicoxydans 0
Janthinobacterium_sp._Marseille 0
Thiobacillus_denitrificans_ATCC_25259 0
Nitrosomonas_sp._Is79A3 0
Nitrosomonas_eutropha_C91 0
Nitrosomonas_europaea_ATCC_19718 0
Sideroxydans_lithotrophicus_ES-1 0
Gallionella_capsiferriformans_ES-2 1
Methylotenera_versatilis_301 0
Methylotenera_mobilis_JLW8 0
Methylovorus_sp._MP688 0
Methylovorus_glucosetrophus_SIP3-4 0
Methylobacillus_flagellatus_KT 0
Novosphingobium_sp._PP1Y 0
Sphingobium_sp._SYK-6 0
Sphingomonas_wittichii_RW1 1
Roseobacter_litoralis_Och_149 0
Roseobacter_denitrificans_OCh_114 0
Rhodobacter_sphaeroides_ATCC_17029 0
Rhodospirillum_photometricum_DSM_122 0
Tistrella_mobilis_KA081020-065 0
Rhodospirillum_centenum_SW 0
Rhodospirillum_rubrum_F11 1
Acidiphilium_multivorum_AIU301 0
Acidiphilium_cryptum_JF-5 0
Polymorphum_gilvum_SL003B-26A1 0
Starkeya_novella_DSM_506 0
Azorhizobium_caulinodans_ORS_571 0
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 1
Methylocella_silvestris_BL2 0
Saccharophagus_degradans_2-40 0
Cellvibrio_japonicus_Ueda107 0
Oceanimonas_sp._GK1 0
Aeromonas_veronii_B565 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Idiomarina_loihiensis_L2TR 0
Ferrimonas_balearica_DSM_9799 0
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_sediminis_HAW-EB3 1
Shewanella_denitrificans_OS217 0
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 0
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 0
Shewanella_amazonensis_SB2B 0
Shewanella_violacea_DSS12 0
Shewanella_frigidimarina_NCIMB_400 0
Shewanella_putrefaciens_CN-32 0
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_haloplanktis_TAC125 0
Glaciecola_nitratireducens_FR1064 0
Marinobacter_adhaerens_HP15 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Alteromonas_sp._SN2 0
Kangiella_koreensis_DSM_16069 0
Hahella_chejuensis_KCTC_2396 0
Alcanivorax_borkumensis_SK2 1
Methylomicrobium_alcaliphilum 0
Methylomonas_methanica_MC09 0
Methylococcus_capsulatus_str._Bath 0
Rhodanobacter_denitrificans 0
Alkalilimnicola_ehrlichii_MLHE-1 0
Thioalkalivibrio_sp._K90mix 0
Allochromatium_vinosum_DSM_180 0
Thiocystis_violascens_DSM_198 0
Nitrosococcus_watsonii_C-113 0
Nitrosococcus_halophilus_Nc4 0
Nitrosococcus_oceani_ATCC_19707 0
Legionella_longbeachae_NSW150 0
gamma_proteobacterium_HdN1 0
Edwardsiella_tarda_EIB202 1
Serratia_sp._ATCC_39006 0
Dickeya_dadantii_Ech703 0
Dickeya_zeae_Ech1591 0
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_atrosepticum_SCRI1043 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Erwinia_billingiae_Eb661 0
Pseudomonas_sp._TKP 0
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_entomophila_L48 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_stutzeri_A1501 0
Pseudomonas_fulva_12-X 0
Pseudomonas_putida_F1 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_mendocina_ymp 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Pseudomonas_sp._VLB120 0
Methylophaga_sp._JAM1 0
Cycloclasticus_sp._P1 0

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Strains
Genome     Number
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7424 0
Cyanobacterium_stanieri_PCC_7202 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Gordonibacter_pamelaeae_7-10-1-b 0
Mycobacterium_gilvum_Spyr1 0
Deinococcus_peraridilitoris_DSM_19664 0
Desulfitobacterium_hafniense_DCB-2 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_cereus_AH187 0
Bacillus_cereus_Q1 0
Bacillus_cereus_NC7401 0
Hydrogenobacter_thermophilus_TK-6 0
Leptospirillum_ferriphilum_ML-04 1
Acidithiobacillus_ferrooxidans_ATCC_23270 0
Arcobacter_butzleri_7h1h 0
Arcobacter_butzleri_ED-1 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Geobacter_sulfurreducens_PCA 0
Burkholderia_phenoliruptrix_BR3459a 0
Pandoraea_pnomenusa_3kgm 0
Ralstonia_pickettii_12J 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_sp._CCGE1003 0
Burkholderia_sp._CCGE1001 0
Burkholderia_sp._KJ006 0
Burkholderia_lata 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Burkholderia_cenocepacia_J2315 0
Burkholderia_multivorans_ATCC_17616 0
Burkholderia_cepacia_GG4 0
Alicycliphilus_denitrificans_BC 0
Nitrosomonas_sp._AL212 0
Sulfuricella_denitrificans_skB26 0
Rhodobacter_sphaeroides_KD131 0
Rhodobacter_sphaeroides_ATCC_17025 0
Rhodobacter_sphaeroides_2.4.1 0
Rhodospirillum_rubrum_ATCC_11170 1
Methylobacterium_extorquens_DM4 2
Methylobacterium_extorquens_PA1 1
Rhodopseudomonas_palustris_HaA2 0
Rhodopseudomonas_palustris_BisB5 0
Aeromonas_hydrophila_ML09-119 0
Idiomarina_loihiensis_GSL_199 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 0
Thioalkalivibrio_nitratireducens_DSM_14787 0
Thioflavicoccus_mobilis_8321 0
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Dickeya_dadantii_Ech586 0
Dickeya_dadantii_3937 0
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 0
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_stutzeri_CCUG_29243 0
Pseudomonas_stutzeri_DSM_10701 0
Pseudomonas_stutzeri_DSM_4166 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_resinovorans_NBRC_106553 0
Pseudomonas_mendocina_NK-01 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_RP73 0
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 0
Pseudomonas_aeruginosa_PA7 0
Pseudomonas_aeruginosa_PAO1 0
Cycloclasticus_zancles_7-ME 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 2
STRING_v9.0.5_(STRING) 18
Uniprot_2018_03_genome 2634
NCBI_2017_08_genome 647
TargetDB__(Targets) 0

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