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  Home > SCOP hierarchy > Domain combination - 55785,55781,47384,55874

Domain combinations for 55785,55781,47384,55874 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55785 - PYP-like sensor domain (PAS domain)
55781 - GAF domain-like
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Thermobaculum_terrenum_ATCC_BAA-798 1
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Thermosynechococcus_sp._NK55 0
Thermosynechococcus_elongatus_BP-1 0
Synechococcus_sp._PCC_7502 0
Synechococcus_sp._PCC_6312 0
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 0
Geitlerinema_sp._PCC_7407 0
Cyanothece_sp._PCC_8802 0
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 0
Gloeobacter_violaceus_PCC_7421 0
Rivularia_sp._PCC_7116 0
Calothrix_sp._PCC_7507 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7107 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 0
Nostoc_sp._PCC_7524 0
Conexibacter_woesei_DSM_14684 0
Kribbella_flavida_DSM_17836 0
Nocardioides_sp._JS614 0
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 2
Actinoplanes_missouriensis_431 0
Mycobacterium_sp._JLS 0
Mycobacterium_vanbaalenii_PYR-1 0
Mycobacterium_gilvum_PYR-GCK 0
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 0
Anaerolinea_thermophila_UNI-1 0
Sphaerobacter_thermophilus_DSM_20745 0
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Deinococcus_gobiensis_I-0 0
Deinococcus_deserti_VCD115 0
Deinococcus_maricopensis_DSM_21211 1
Deinococcus_geothermalis_DSM_11300 0
Deinococcus_proteolyticus_MRP 0
Deinococcus_radiodurans_R1 0
Clostridium_thermocellum_ATCC_27405 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Gemmatimonas_aurantiaca_T-27 1
Melioribacter_roseus_P3M 0
Ignavibacterium_album_JCM_16511 0
Pelodictyon_phaeoclathratiforme_BU-1 0
Chlorobium_luteolum_DSM_273 0
Chlorobium_phaeobacteroides_DSM_266 0
Chlorobium_phaeovibrioides_DSM_265 0
Chlorobium_limicola_DSM_245 0
Chlorobaculum_parvum_NCIB_8327 0
Chlorobium_tepidum_TLS 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 1
Salinibacter_ruber_M8 0
Belliella_baltica_DSM_15883 0
Cyclobacterium_marinum_DSM_745 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Bacteroides_sp._CF50 0
Pedobacter_saltans_DSM_12145 0
Sphingobacterium_sp._21 0
Owenweeksia_hongkongensis_DSM_17368 0
Croceibacter_atlanticus_HTCC2559 0
Polaribacter_sp._MED152 0
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 0
Coraliomargarita_akajimensis_DSM_45221 0
Opitutus_terrae_PB90-1 0
Thermanaerovibrio_acidaminovorans_DSM_6589 0
Spirochaeta_africana_DSM_8902 0
Desulfurispirillum_indicum_S5 0
Fervidobacterium_pennivorans_DSM_9078 0
Fervidobacterium_nodosum_Rt17-B1 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Candidatus_Koribacter_versatilis_Ellin345 0
Candidatus_Nitrospira_defluvii 0
Candidatus_Methylomirabilis_oxyfera 0
Acidithiobacillus_caldus_SM-1 0
Bdellovibrio_bacteriovorus_HD100 0
Desulfarculus_baarsii_DSM_2075 0
Desulfobacca_acetoxidans_DSM_11109 0
Desulfomonile_tiedjei_DSM_6799 0
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfococcus_oleovorans_Hxd3 1
Desulfohalobium_retbaense_DSM_5692 0
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_alaskensis_G20 0
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Desulfovibrio_salexigens_DSM_2638 0
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_daltonii_FRC-32 0
Geobacter_sp._M21 0
Geobacter_uraniireducens_Rf4 0
Geobacter_lovleyi_SZ 0
Geobacter_bemidjiensis_Bem 0
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 0
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_sp._Fw109-5 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 3
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 3
Thauera_sp._MZ1T 0
Dechlorosoma_suillum_PS 0
Leptothrix_cholodnii_SP-6 0
Burkholderia_glumae_BGR1 0
Ramlibacter_tataouinensis_TTB310 0
Polaromonas_sp._JS666 0
Polaromonas_naphthalenivorans_CJ2 0
Variovorax_paradoxus_S110 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Herbaspirillum_seropedicae_SmR1 0
Nitrosospira_multiformis_ATCC_25196 0
Gallionella_capsiferriformans_ES-2 1
Magnetococcus_marinus_MC-1 0
Sphingobium_chlorophenolicum_L-1 0
Tistrella_mobilis_KA081020-065 0
Magnetospirillum_magneticum_AMB-1 0
Azospirillum_brasilense_Sp245 1
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_sp._4-46 0
Methylobacterium_populi_BJ001 0
Methylobacterium_nodulans_ORS_2060 0
Methylobacterium_radiotolerans_JCM_2831 0
Parvibaculum_lavamentivorans_DS-1 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 0
Mesorhizobium_loti_MAFF303099 0
Bradyrhizobium_sp._ORS_278 0
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Oceanimonas_sp._GK1 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_haloplanktis_TAC125 0
Marinobacter_sp._BSs20148 0
Methylococcus_capsulatus_str._Bath 0
Pseudoxanthomonas_spadix_BD-a59 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Halothiobacillus_neapolitanus_c2 0
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Thiocystis_violascens_DSM_198 0
Nitrosococcus_halophilus_Nc4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_entomophila_L48 0
Pseudomonas_putida_F1 0
Pseudomonas_fluorescens_SBW25 0
Cycloclasticus_sp._P1 0
Thiomicrospira_crunogena_XCL-2 0
halophilic_archaeon_DL31 2
Methanosaeta_harundinacea_6Ac 0
Methanosalsum_zhilinae_DSM_4017 2
Methanococcoides_burtonii_DSM_6242 2
Methanohalophilus_mahii_DSM_5219 0
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 0
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 0
Halorubrum_lacusprofundi_ATCC_49239 1
Halogeometricum_borinquense_DSM_11551 0
Haloferax_mediterranei_ATCC_33500 1
Haloferax_volcanii_DS2 0
Halomicrobium_mukohataei_DSM_12286 0
Halorhabdus_utahensis_DSM_12940 0
Natronomonas_pharaonis_DSM_2160 1
Haloarcula_hispanica_ATCC_33960 0
Haloarcula_marismortui_ATCC_43049 0
Halalkalicoccus_jeotgali_B3 0
Halobacterium_salinarum_R1 3
Halobacterium_sp._NRC-1 2
Aciduliprofundum_sp._MAR08-339 0
Aciduliprofundum_boonei_T469 0

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Cyanobium_gracile_PCC_6307 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 0
Synechococcus_sp._PCC_7002 0
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7425 0
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 0
Cyanobacterium_aponinum_PCC_10605 0
Cyanobacterium_stanieri_PCC_7202 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Saccharothrix_espanaensis_DSM_44229 0
Actinoplanes_friuliensis_DSM_7358 0
Rhodococcus_pyridinivorans_SB3094 0
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_gilvum_Spyr1 0
Mycobacterium_kansasii_ATCC_12478 0
Deinococcus_peraridilitoris_DSM_19664 2
Clostridium_thermocellum_DSM_1313 1
Desulfosporosinus_meridiei_DSM_13257 0
Salinibacter_ruber_DSM_13855 0
Psychroflexus_torquis_ATCC_700755 0
Singulisphaera_acidiphila_DSM_18658 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Desulfocapsa_sulfexigens_DSM_10523 0
Desulfobacula_toluolica_Tol2 2
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sp._M18 1
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_sp._K 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 3
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 0
Variovorax_paradoxus_B4 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Mesorhizobium_australicum_WSM2073 0
Bradyrhizobium_sp._BTAi1 0
Bradyrhizobium_oligotrophicum_S58 0
Simiduia_agarivorans_SA1_=_DSM_21679 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 0
Cycloclasticus_zancles_7-ME 0
Methanomethylovorans_hollandica_DSM_15978 0
Methanolobus_psychrophilus_R15 1
Halovivax_ruber_XH-70 0
Natrinema_pellirubrum_DSM_15624 0
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 0
Halorhabdus_tiamatea_SARL4B 0
Natronomonas_moolapensis_8.8.11 0
Haloarcula_hispanica_N601 0

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 2
STRING_v9.0.5_(STRING) 19
Uniprot_2018_03_genome 3930
TargetDB__(Targets) 0
NCBI_2017_08_genome 364

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.