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Domain combinations for 56672,_gap_,53098 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56672 - DNA/RNA polymerases
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Bombyx_mori_   (Domestic silkworm)   3
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   3
Meloidogyne_hapla_ 0
Onchocerca_volvulus_22 2
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 1
Chaetomium_globosum_CBS_148.51_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   9
Dictyostelium_discoideum 0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   15
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   6
Solanum_tuberosum_   (Potato)   0
Triticum_urartu_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8
Oryza_sativa_v193   (Rice)   8
Musa_balbisiana   (Balbis banana)   0
Cyanophora_paradoxa_ 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 0
Perkinsus_marinus_ATCC_50983_ 1
Toxoplasma_gondii_ME49 0
Symbiodinium_minutum_clade_B1_v1.2 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   5
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   9

Longest transcript per gene
Genome     Number
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Danio_rerio_69_9   (Zebrafish)   0

Others
Genome     Number
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Moniliophthora_perniciosa_FA553__(Genome_survey) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 24
Uniprot_2018_03_genome 1386
NCBI_2017_08_genome 430

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