SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 57581,57196,57581,_gap_,57184,57184,57184,57184,57196,57196,_gap_,57581,57196,57196,57581,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57581 - TB module/8-cys domain
57196 - EGF/Laminin
57581 - TB module/8-cys domain
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain
57184 - Growth factor receptor domain
57196 - EGF/Laminin
57196 - EGF/Laminin
57581 - TB module/8-cys domain
57196 - EGF/Laminin
57196 - EGF/Laminin
57581 - TB module/8-cys domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Papio_anubis_76   (Olive baboon)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Canis_familiaris_76_3.1   (Dog)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Canis_familiaris_69_3.1   (Dog)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 116
NCBI_2017_08_genome 0

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