SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 57603,57603,57603,57603,57603,57603,57440,57440,57603,57603,57603,49265,_gap_,49265,_gap_,49265,49265,49265,49265,_gap_,49265,_gap_,49265,49265,49265,_gap_,49265,57603,57603,57603,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
57440 - Kringle-like
57440 - Kringle-like
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
49265 - Fibronectin type III
57603 - FnI-like domain
57603 - FnI-like domain
57603 - FnI-like domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Mus_musculus_76_38   (House mouse)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Felis_catus_76_6.2   (Domestic cat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Danio_rerio_76_9   (Zebrafish)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Mus_musculus_69_38   (House mouse)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Danio_rerio_69_9   (Zebrafish)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 419
NCBI_2017_08_genome 0

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