SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 57667,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57667 - beta-beta-alpha zinc fingers

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   40
Pan_troglodytes_76_2.1.4   (Chimpanzee)   8
Gorilla_gorilla_76_3.1   (Western gorilla)   13
Pongo_abelii_76_2   (Sumatran orangutan)   10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10
Papio_anubis_76   (Olive baboon)   12
Macaca_mulatta_76_1   (Rhesus monkey)   18
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   16
Otolemur_garnettii_76_3   (Small-eared galago)   10
Microcebus_murinus_76_1   (Gray mouse lemur)   8
Rattus_norvegicus_76_5.0   (Norway rat)   10
Mus_musculus_76_38   (House mouse)   31
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7
Cavia_porcellus_76_3   (Domestic guinea pig)   11
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   10
Sus_scrofa_76_10.2   (Pig)   14
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   10
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_76_1   (Giant panda)   10
Canis_familiaris_76_3.1   (Dog)   16
Felis_catus_76_6.2   (Domestic cat)   10
Equus_caballus_76_2   (Horse)   10
Myotis_lucifugus_76_2.0   (Little brown bat)   9
Pteropus_vampyrus_76_1   (Large flying fox)   8
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   10
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   11
Echinops_telfairi_76   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   10
Ornithorhynchus_anatinus_76_5   (Platypus)   11
Saccoglossus_kowalevskii_v3.0 17
Petromyzon_marinus_76_7.0   (Sea lamprey)   13
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   10
Anas_platyrhynchos_76_1.0   (Mallard)   11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7
Latimeria_chalumnae_76_1   (Coelacanth)   10
Lepisosteus_oculatus_76   (Spotted gar)   11
Gadus_morhua_76_1   (Atlantic cod)   13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   8
Takifugu_rubripes_76_4   (Torafugu)   11
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   15
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4
Poecilia_formosa_76   (Amazon molly)   4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   7
Danio_rerio_76_9   (Zebrafish)   18
Oikopleura_dioica 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   6
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   12
Adineta_vaga 24
Octopus_bimaculoides_280 16
Crassostrea_gigas_22   (Pacific oyster)   22
Lottia_gigantea_   (Owl limpet)   14
Helobdella_robusta_ 18
Capitella_sp._I_ 14
Danaus_plexippus_OGS1.0   (Monarch butterfly)   10
Heliconius_melpomene_   (Postman butterfly)   10
Bombyx_mori_   (Domestic silkworm)   24
Nasonia_vitripennis_   (Jewel wasp)   7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   15
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   13
Linepithema_humile_v1.1   (Argentine ant)   18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   13
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11
Atta_cephalotes_v1.1 20
Camponotus_floridanus_v3.3   (Florida carpenter ant)   10
Lucilia_cuprina   (Australian sheep blowfly)   12
Drosophila_grimshawi_1.3 14
Drosophila_willistoni_1.3 18
Drosophila_pseudoobscura_2.13 16
Drosophila_persimilis_1.3 14
Drosophila_suzukii 13
Drosophila_yakuba_1.3 10
Drosophila_simulans_1.3 17
Drosophila_sechellia_1.3 11
Drosophila_melanogaster_76_5   (Fruit fly)   12
Drosophila_erecta_1.3 11
Drosophila_ananassae_1.3 15
Drosophila_virilis_1.2 12
Drosophila_mojavensis_1.3 14
Megaselia_scalaris_22 17
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   18
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   35
Anopheles_darlingi_22   (American malaria mosquito)   8
Anopheles_gambiae_49_3j   (African malaria mosquito)   20
Tribolium_castaneum_3.0   (Red flour beetle)   11
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   12
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 29
Daphnia_pulex_   (Common water flea)   21
Strigamia_maritima_22 9
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   14
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   16
Pristionchus_pacificus_ 21
Meloidogyne_incognita_   (Southern root-knot nematode)   22
Meloidogyne_hapla_ 15
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8
Caenorhabditis_japonica_ 14
Caenorhabditis_brenneri_ 19
Caenorhabditis_remanei_ 23
Caenorhabditis_elegans_76_235   (Roundworm)   9
Caenorhabditis_briggsae_2 12
Trichinella_spiralis_22 8
Hymenolepis_microstoma_ 5
Echinococcus_multilocularis_ 6
Echinococcus_granulosus_ 10
Taenia_solium_   (Pork tapeworm)   10
Schistosoma_mansoni_ 8
Mnemiopsis_leidyi   (Sea walnut)   10
Thelohanellus_kitauei 5
Acropora_digitifera_v1.0 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   9
Hydra_vulgaris 6
Amphimedon_queenslandica 15
Trichoplax_adhaerens_ 6
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 9
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 6
Conidiobolus_coronatus_NRRL28638_v1.0 8
Mortierella_verticillata_NRRL_6337_ 4
Phycomyces_blakesleeanus_ 25
Rhizopus_oryzae_RA_99-880_ 20
Mucor_circinelloides_ 14
Rhizomucor_miehei_CAU432_ 10
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 8
Ustilago_maydis_ 6
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5
Melampsora_laricis-populina_ 6
Rhodotorula_graminis_WP1_v1.0 4
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 5
Wallemia_sebi_v1.0 11
Sphaerobolus_stellatus_v1.0 17
Piloderma_croceum_F_1598_v1.0 8
Serpula_lacrymans_var._lacrymans_S7.9_ 5
Coniophora_puteana 9
Hydnomerulius_pinastri_v2.0 9
Paxillus_rubicundulus_Ve08.2h10_v1.0 9
Pisolithus_microcarpus_441_v1.0 8
Pisolithus_tinctorius_Marx_270_v1.0 8
Scleroderma_citrinum_Foug_A_v1.0 8
Coprinopsis_cinerea_okayama7_130_v3 13
Pleurotus_ostreatus_   (Oyster mushroom)   7
Amanita_thiersii_Skay4041_v1.0 8
Amanita_muscaria_Koide_v1.0   (Fly agaric)   7
Galerina_marginata_v1.0 8
Hebeloma_cylindrosporum_h7_v2.0 13
Laccaria_bicolor_S238N-H82_ 8
Agaricus_bisporus_var._bisporus_ 9
Schizophyllum_commune_ 8
Stereum_hirsutum_FP-91666_SS1__v1.0 10
Heterobasidion_annosum_ 6
Gloeophyllum_trabeumv1.0 8
Punctularia_strigosozonata_v1.0 9
Sebacina_vermifera_MAFF_305830_v1.0 7
Fomitiporia_mediterranea_v1.0 8
Tulasnella_calospora_AL13/4D_v1.0 15
Postia_placenta_ 5
Wolfiporia_cocos_MD-104_SS10__v1.0 8
Fomitopsis_pinicolav1.0 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8
Phanerochaete_chrysosporium_RP-78_2.1 6
Dichomitus_squalens 9
Trametes_versicolor_v1.0 5
Tremella_mesenterica_   (Witches' butter)   6
Daldinia_eschscholzii_EC12_v1.0 10
Apiospora_montagnei_NRRL_25634_v1.0 18
Magnaporthe_poae_ATCC_64411_22 5
Magnaporthe_grisea_70-15_ 9
Podospora_anserina_ 5
Sporotrichum_thermophile_ATCC_42464_ 7
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 7
Neurospora_tetrasperma_ 7
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 9
Cryphonectria_parasitica_   (Chestnut blight fungus)   9
Verticillium_albo-atrum_VaMs.102_ 7
Verticillium_dahliae_VdLs.17_ 10
Acremonium_alcalophilumv_1.0 9
Glomerella_graminicola_22 8
Fusarium_graminearum_ 9
Nectria_haematococca_mpVI_ 16
Fusarium_oxysporum_f._sp._lycopersici_4286_ 14
Fusarium_verticillioides_7600_ 8
Trichoderma_asperellum_CBS_433.97_v1.0 9
Trichoderma_atroviride_ 10
Trichoderma_citrinoviride_v1.0 6
Trichoderma_reesei_1.2 10
Trichoderma_virens_Gv29-8_ 14
Trichoderma_longibrachiatum_ATCC_18648_v1.0 8
Trichoderma_harzianum_CBS_226.95_v1.0 15
Amorphotheca_resinae_v1.0   (Creosote fungus)   9
Botrytis_cinerea_B05.10_ 8
Sclerotinia_sclerotiorum_ 10
Blumeria_graminis_22 7
Didymella_exigua_CBS_183.55_v1.0 11
Leptosphaeria_maculans_22 8
Setosphaeria_turcica_v1.0 11
Cochliobolus_miyabeanus_ATCC_44560_v1.0 8
Cochliobolus_victoriae_FI3_v1.0 8
Cochliobolus_carbonum_26-R-13_v1.0 9
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   10
Alternaria_brassicicola_ 11
Cochliobolus_lunatus_m118_v2.0 10
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 9
Stagonospora_nodorum_ 9
Mycosphaerella_graminicola_IPO323_ 6
Zasmidium_cellare_ATCC_36951_v1.0 7
Dothistroma_septosporum 10
Septoria_musiva_v1.0 6
Mycosphaerella_fijiensis_CIRAD86_ 9
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 15
Paracoccidioides_brasiliensis_Pb18_ 5
Coccidioides_posadasii_RMSCC_3488_ 8
Coccidioides_immitis_RS_ 6
Ajellomyces_dermatitidis_SLH14081_ 10
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 8
Microsporum_canis_CBS_113480_ 5
Trichophyton_equinum_CBS_127.97_ 8
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 10
Trichophyton_rubrum_CBS_118892_ 8
Uncinocarpus_reesii_1704_ 8
Aspergillus_zonatus_v1.0 14
Penicillium_chrysogenum_Wisconsin_54-1255_ 20
Penicillium_chrysogenum_v1.0 18
Aspergillus_acidus_v1.0 20
Aspergillus_fumigatus_Af293 11
Aspergillus_brasiliensis_v1.0 25
Aspergillus_nidulans_FGSC_A4_ 14
Aspergillus_sydowii_v1.0 19
Aspergillus_versicolor_v1.0 23
Aspergillus_glaucus 22
Aspergillus_carbonarius_ITEM_5010_ 11
Neosartorya_fischeri_NRRL_181_ 14
Aspergillus_terreus_NIH2624_ 11
Aspergillus_tubingensis_v1.0 18
Aspergillus_wentii_v1.0 19
Aspergillus_oryzae_RIB40_ 5
Aspergillus_niger_22 15
Aspergillus_niger_ATCC_1015_ 9
Aspergillus_flavus_NRRL3357_ 11
Aspergillus_clavatus_NRRL_1_ 10
Penicillium_marneffei_ATCC_18224_ 13
Tuber_melanosporum_Mel28_22 8
Tuber_melanosporum_Vittad_   (Perigord truffle)   8
Hansenula_polymorpha_v2.0 8
Dekkera_bruxellensis_CBS_2499_v2.0 6
Pichia_membranifaciensv1.0 7
Candida_tanzawaensis_NRRL_Y-17324__v1.0 11
Candida_dubliniensis_CD36_ 6
Candida_tropicalis_MYA-3404_ 6
Candida_parapsilosis_ 5
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 11
Pichia_stipitis_CBS_6054_ 11
Candida_guilliermondii_ATCC_6260_ 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 9
Debaromyces_hansenii 10
Wickerhamomyces_anomalus 9
Pichia_pastoris_GS115_ 6
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 5
Yarrowia_lipolytica_CLIB122 7
Candida_lusitaniae_ATCC_42720_ 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 8
Vanderwaltozyma_polyspora_DSM_70294_ 8
Candida_glabrata_CBS138 10
Kluyveromyces_thermotolerans_CBS_6340 6
Lachancea_kluyveri_ 6
Kluyveromyces_waltii 5
Ashbya_gossypii_ATCC_10895_ 5
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 8
Saccharomyces_paradoxus_MIT 7
Saccharomyces_cerevisiae_76   (Baker's yeast)   7
Saccharomyces_bayanus_MIT 6
Kluyveromyces_lactis 6
Schizosaccharomyces_cryophilus_OY26_22 5
Schizosaccharomyces_octosporus_yFS286_ 5
Schizosaccharomyces_japonicus_yFS275_ 5
Schizosaccharomyces_pombe   (Fission yeast)   10
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 11
Spizellomyces_punctatus_DAOM_BR117_ 5
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 3
Entamoeba_histolytica_1 4
Selaginella_moellendorffii_ 14
Pinus_taeda   (Loblolly pine)   7
Picea_abies   (Norway spruce)   6
Eucalyptus_grandis_v201   (Rose gum)   13
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12
Gossypium_raimondii_v221 43
Citrus_clementina_v165 16
Citrus_sinensis_v154   (Sweet orange)   22
Thellungiella_halophila_v173 13
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   26
Capsella_rubella_v183 18
Arabidopsis_lyrata_   (Lyrate rockcress)   17
Arabidopsis_thaliana_10   (Thale cress)   18
Carica_papaya_   (Papaya)   12
Medicago_truncatula_   (Barrel medic)   18
Phaseolus_vulgaris_v186   (French bean)   25
Glycine_max_v109   (Soybean)   47
Cucumis_sativus_v122   (Cucumber)   26
Fragaria_vesca_   (Wild strawberry)   15
Malus_domestica_v196   (Apple)   22
Prunus_persica_v139   (Peach)   19
Linum_usitatissimum_v200   (Flax)   22
Manihot_esculenta_v147   (Cassava)   25
Populus_trichocarpa_v156   (Black cottonwood)   27
Vitis_vinifera_   (Wine grape)   10
Mimulus_guttatus_v140   (Spotted monkey flower)   22
Solanum_lycopersicum_v.2.3   (Tomato)   21
Solanum_tuberosum_   (Potato)   32
Actinidia_chinensis_Hongyang_ 11
Aquilegia_coerulea_v195 15
Triticum_urartu_22 20
Triticum_aestivum_22   (Bread wheat)   32
Aegilops_tauschii_22 16
Brachypodium_distachyon_   (Stiff brome)   15
Oryza_barthii_22   (African wild rice)   17
Oryza_meridionalis_22 13
Oryza_glumaepatula_22 22
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 19
Oryza_nivara_22 21
Oryza_brachyantha_22   (Malo sina)   12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   13
Oryza_sativa_v193   (Rice)   14
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   14
Panicum_virgatum_v202   (Switchgrass)   42
Setaria_italica_v164   (Foxtail millet)   21
Zea_mays_subsp._mays_   (Maize)   21
Zea_mays_v181   (Maize)   24
Sorghum_bicolor_   (Sorghum)   21
Musa_balbisiana   (Balbis banana)   26
Musa_acuminata_22   (Wild Malaysian banana)   25
Amborella_trichopoda_22 16
Physcomitrella_patens 12
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 4
Volvox_carteri_v199 3
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 3
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 6
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 5
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 3
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 4
Aureococcus_anophagefferens_ 2
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 8
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 5
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   9
Phytophthora_sojae_1.1 4
Phytophthora_infestans_T30-4_ 8
Phytophthora_capsici_ 4
Hyaloperonospora_arabidopsidis_22 6
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 6
Paramecium_tetraurelia_ 10
Tetrahymena_thermophila_SB210_1_ 5
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 2
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 2
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 3
Theileria_annulata 3
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 4
Plasmodium_yoelii_ssp._yoelii_1_ 4
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 4
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 4
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 7
Xenorhabdus_bovienii_SS-2004 1
Pantoea_sp._At-9b 0
Candidatus_Nitrosopumilus_sp._AR2 1
Pyrolobus_fumarii_1A 1
Sulfolobus_islandicus_Y.N.15.51 1
Halopiger_xanaduensis_SH-6 1
Haloferax_mediterranei_ATCC_33500 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   14
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   15
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   5
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 6
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 6
Coccidioides_immitis_RMSCC_3703_ 7
Coccidioides_immitis_RMSCC_2394_ 7
Coccidioides_immitis_H538.4_ 4
Ajellomyces_dermatitidis_ER-3_ 11
Histoplasma_capsulatum_H143 11
Histoplasma_capsulatum_H88 9
Histoplasma_capsulatum_G186AR 9
Aspergillus_fumigatus_A1163_ 11
Candida_albicans_WO-1_ 6
Saccharomyces_cerevisiae_UC5 7
Saccharomyces_cerevisiae_PW5 6
Saccharomyces_cerevisiae_FL100 5
Saccharomyces_cerevisiae_CLIB382 2
Saccharomyces_cerevisiae_CLIB324 6
Saccharomyces_cerevisiae_CBS7960 4
Saccharomyces_cerevisiae_YJM269 5
Saccharomyces_cerevisiae_T7 7
Saccharomyces_cerevisiae_FostersB 6
Saccharomyces_cerevisiae_FostersO 5
Saccharomyces_cerevisiae_VL3 5
Saccharomyces_cerevisiae_Vin13 6
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 6
Saccharomyces_cerevisiae_Sigma1278b 7
Saccharomyces_cerevisiae_W303 7
Saccharomyces_cerevisiae_JAY291 7
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_M22 3
Saccharomyces_cerevisiae_T73 5
Saccharomyces_cerevisiae_CLIB215 5
Saccharomyces_cerevisiae_Y10 4
Saccharomyces_cerevisiae_YJM789_ 7
Saccharomyces_cerevisiae_YJM789 7
Saccharomyces_cerevisiae_RM11-1a 7
Saccharomyces_cerevisiae_RM11-1a_ 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7
Schizosaccharomyces_pombe_972h-_ 10
Batrachochytrium_dendrobatidis_JEL423_ 5
Batrachochytrium_dendrobatidis_JAM81_ 5
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   13
Hordeum_vulgare_22   (Domesticated barley)   20
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   13
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 3
Plasmodium_falciparum_Dd2_ 2
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 2
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Sulfolobus_islandicus_Y.G.57.14 1
Haloarcula_hispanica_N601 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   8
Pongo_abelii_69_2   (Sumatran orangutan)   10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8
Macaca_mulatta_69_1   (Rhesus monkey)   11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   10
Microcebus_murinus_69_1   (Gray mouse lemur)   8
Rattus_norvegicus_69_3.4   (Norway rat)   11
Mus_musculus_69_38   (House mouse)   10
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_69_2   (Rabbit)   6
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   10
Sus_scrofa_69_10.2   (Pig)   14
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10
Ailuropoda_melanoleuca_69_1   (Giant panda)   9
Canis_familiaris_69_3.1   (Dog)   14
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   9
Myotis_lucifugus_69_2.0   (Little brown bat)   9
Pteropus_vampyrus_69_1   (Large flying fox)   8
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   10
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   10
Echinops_telfairi_69   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_69_5   (Platypus)   9
Petromyzon_marinus_69_7.0   (Sea lamprey)   10
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_69_2.0   (Green anole)   9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   8
Gadus_morhua_69_1   (Atlantic cod)   12
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   11
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_69   (Vase tunicate)   6
Drosophila_melanogaster_69_5   (Fruit fly)   9
Caenorhabditis_elegans_69_215   (Roundworm)   6
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7
Arabidopsis_thaliana_10   (Thale cress)   17

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   44
Homo_sapiens__(NCBI_version)   (Human)   11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   11
Heliconius_numata__(Incomplete) 14
Loa_loa_v3.3_(Request)   (Eye worm)   19
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Encephalitozoon_intestinalis__(endoparasite) 2
Encephalitozoon_cuniculi_(endoparasite) 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4
Lotus_japonicus__(Early_assembly) 20
Malus_x_domestica_(Duplicate)   (Apple)   22
Ricinus_communis__(Early_assembly)   (Castor bean)   15
Nicotiana_benthamiana_0.4.4_(Early_draft) 40
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   21
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   21
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
NCBI_plasmid_sequences_(Plasmids) 8
Protein_Data_Bank_(all_PDB_sequenc) 17
Protozoadb_2010_08_(Protozoadb) 95
STRING_v9.0.5_(STRING) 1142
Uniprot_2018_03_genome 49284
Core_Eukaryotic_Genes_458_(CEGMA) 0
NCBI_viral_sequences_(Viral) 13
NCBI_2017_08_genome 9609
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
PDB_chains_(SCOP_1.75)_(PDB) 0
UniProt__viral_sequences_(Viral) 5
TargetDB__(Targets) 28

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]