SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 57850,57845,_gap_,49899 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57850 - RING/U-box
57845 - B-box zinc-binding domain
49899 - Concanavalin A-like lectins/glucanases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   119
Pan_troglodytes_76_2.1.4   (Chimpanzee)   29
Gorilla_gorilla_76_3.1   (Western gorilla)   45
Pongo_abelii_76_2   (Sumatran orangutan)   28
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   26
Papio_anubis_76   (Olive baboon)   28
Macaca_mulatta_76_1   (Rhesus monkey)   71
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   58
Otolemur_garnettii_76_3   (Small-eared galago)   20
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   17
Mus_musculus_76_38   (House mouse)   44
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   16
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   20
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13
Cavia_porcellus_76_3   (Domestic guinea pig)   17
Oryctolagus_cuniculus_76_2   (Rabbit)   22
Ochotona_princeps_76   (American pika)   18
Tupaia_belangeri_76   (Northern tree shrew)   10
Sus_scrofa_76_10.2   (Pig)   39
Bos_taurus_76_3.1   (Cattle)   29
Ovis_aries_76_3.1   (Sheep)   30
Vicugna_pacos_76_1   (Alpaca)   8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15
Mustela_putorius_furo_76_1.0   (Domestic ferret)   19
Ailuropoda_melanoleuca_76_1   (Giant panda)   21
Canis_familiaris_76_3.1   (Dog)   23
Felis_catus_76_6.2   (Domestic cat)   25
Equus_caballus_76_2   (Horse)   18
Myotis_lucifugus_76_2.0   (Little brown bat)   29
Pteropus_vampyrus_76_1   (Large flying fox)   15
Sorex_araneus_76_1   (European shrew)   7
Erinaceus_europaeus_76   (Western European hedgehog)   9
Procavia_capensis_76_1   (Cape rock hyrax)   16
Loxodonta_africana_76_3   (African savanna elephant)   56
Echinops_telfairi_76   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   23
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   8
Macropus_eugenii_76_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   43
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   61
Ornithorhynchus_anatinus_76_5   (Platypus)   20
Saccoglossus_kowalevskii_v3.0 2
Meleagris_gallopavo_76_2   (Turkey)   5
Gallus_gallus_76_4   (Chicken)   11
Anas_platyrhynchos_76_1.0   (Mallard)   6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   50
Anolis_carolinensis_76_2.0   (Green anole)   33
Xenopus_laevis_   (African clawed frog)   8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   24
Latimeria_chalumnae_76_1   (Coelacanth)   57
Lepisosteus_oculatus_76   (Spotted gar)   15
Gadus_morhua_76_1   (Atlantic cod)   36
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   19
Takifugu_rubripes_76_4   (Torafugu)   106
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   69
Oryzias_latipes_76_1   (Japanese medaka)   31
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   13
Poecilia_formosa_76   (Amazon molly)   33
Oreochromis_niloticus_76_1.0   (Nile tilapia)   67
Astyanax_mexicanus_76   (Mexican tetra)   32
Danio_rerio_76_9   (Zebrafish)   54
Amphimedon_queenslandica 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   19

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   69
Pan_troglodytes_69_2.1.4   (Chimpanzee)   27
Gorilla_gorilla_69_3.1   (Western gorilla)   28
Pongo_abelii_69_2   (Sumatran orangutan)   27
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   25
Macaca_mulatta_69_1   (Rhesus monkey)   31
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   34
Otolemur_garnettii_69_3   (Small-eared galago)   20
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   18
Mus_musculus_69_38   (House mouse)   29
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   16
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   19
Cavia_porcellus_69_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_69_2   (Rabbit)   23
Ochotona_princeps_69   (American pika)   18
Tupaia_belangeri_69   (Northern tree shrew)   10
Sus_scrofa_69_10.2   (Pig)   30
Bos_taurus_69_3.1   (Cattle)   26
Vicugna_pacos_69_1   (Alpaca)   8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15
Mustela_putorius_furo_69_1.0   (Domestic ferret)   19
Ailuropoda_melanoleuca_69_1   (Giant panda)   21
Canis_familiaris_69_3.1   (Dog)   19
Felis_catus_69   (Domestic cat)   10
Equus_caballus_69_2   (Horse)   17
Myotis_lucifugus_69_2.0   (Little brown bat)   29
Pteropus_vampyrus_69_1   (Large flying fox)   15
Sorex_araneus_69_1   (European shrew)   7
Erinaceus_europaeus_69   (Western European hedgehog)   9
Procavia_capensis_69_1   (Cape rock hyrax)   16
Loxodonta_africana_69_3   (African savanna elephant)   48
Echinops_telfairi_69   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   8
Macropus_eugenii_69_1.0   (Tammar wallaby)   8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   41
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   60
Ornithorhynchus_anatinus_69_5   (Platypus)   16
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   44
Anolis_carolinensis_69_2.0   (Green anole)   35
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   21
Latimeria_chalumnae_69_1   (Coelacanth)   55
Gadus_morhua_69_1   (Atlantic cod)   35
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   16
Takifugu_rubripes_69_4   (Torafugu)   16
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   53
Oryzias_latipes_69_1   (Japanese medaka)   24
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   60
Danio_rerio_69_9   (Zebrafish)   47

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   141
Homo_sapiens__(NCBI_version)   (Human)   45
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   28
NCBI_2017_08_genome 6685
TargetDB__(Targets) 6
STRING_v9.0.5_(STRING) 594
Uniprot_2018_03_genome 31380

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]