SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 57889,57889,57889,_gap_,54236,_gap_,111331 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57889 - Cysteine-rich domain
57889 - Cysteine-rich domain
57889 - Cysteine-rich domain
54236 - Ubiquitin-like
111331 - NAD kinase/diacylglycerol kinase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_76_3   (Small-eared galago)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Bos_taurus_76_3.1   (Cattle)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Canis_familiaris_76_3.1   (Dog)   1
Equus_caballus_76_2   (Horse)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Gallus_gallus_76_4   (Chicken)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Acyrthosiphon_pisum_   (Pea aphid)   0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Schistosoma_mansoni_ 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Bos_taurus_69_3.1   (Cattle)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   0
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 672
NCBI_2017_08_genome 35

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]