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  Home > SCOP hierarchy > Domain combination - 58042,_gap_

Domain combinations for 58042,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

58042 - Outer membrane lipoprotein

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Helobdella_robusta_ 1
Linepithema_humile_v1.1   (Argentine ant)   0
Piloderma_croceum_F_1598_v1.0 0
Geobacillus_thermoleovorans_CCB_US3_UF5 1
Geobacillus_kaustophilus_HTA426 1

Strains
Genome     Number
Cyanobacterium_stanieri_PCC_7202 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 123
NCBI_2017_08_genome 66

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.