SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 74924,_gap_,52058,54236 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

74924 - Cap-Gly domain
52058 - L domain-like
54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Capsaspora_owczarzaki_ATCC_30864_ 1
Catenaria_anguillulae_PL171_v1.0 1

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Gallus_gallus_69_2   (Chicken)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 290
NCBI_2017_08_genome 32

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]