SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 81383,117281 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
117281 - Kelch motif

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 0
Octopus_bimaculoides_280 0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 1
Capitella_sp._I_ 0
Heliconius_melpomene_   (Postman butterfly)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Trichinella_spiralis_22 1
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 0
Proterospongia_sp._ATCC_50818_ 0
Phycomyces_blakesleeanus_ 0
Rhizomucor_miehei_CAU432_ 0
Wallemia_sebi_v1.0 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 28
Pinus_taeda   (Loblolly pine)   24
Picea_abies   (Norway spruce)   52
Eucalyptus_grandis_v201   (Rose gum)   16
Theobroma_cacao_B97-61/B2_v1   (Cacao)   13
Gossypium_raimondii_v221 38
Citrus_clementina_v165 14
Citrus_sinensis_v154   (Sweet orange)   14
Thellungiella_halophila_v173 89
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   114
Capsella_rubella_v183 79
Arabidopsis_lyrata_   (Lyrate rockcress)   84
Arabidopsis_thaliana_10   (Thale cress)   71
Carica_papaya_   (Papaya)   12
Medicago_truncatula_   (Barrel medic)   20
Phaseolus_vulgaris_v186   (French bean)   16
Glycine_max_v109   (Soybean)   31
Cucumis_sativus_v122   (Cucumber)   12
Fragaria_vesca_   (Wild strawberry)   13
Malus_domestica_v196   (Apple)   23
Prunus_persica_v139   (Peach)   13
Linum_usitatissimum_v200   (Flax)   10
Manihot_esculenta_v147   (Cassava)   18
Populus_trichocarpa_v156   (Black cottonwood)   25
Vitis_vinifera_   (Wine grape)   10
Mimulus_guttatus_v140   (Spotted monkey flower)   14
Solanum_lycopersicum_v.2.3   (Tomato)   13
Solanum_tuberosum_   (Potato)   20
Actinidia_chinensis_Hongyang_ 19
Aquilegia_coerulea_v195 16
Triticum_urartu_22 6
Triticum_aestivum_22   (Bread wheat)   19
Aegilops_tauschii_22 6
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   7
Oryza_meridionalis_22 9
Oryza_glumaepatula_22 4
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 7
Oryza_nivara_22 8
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   12
Oryza_sativa_v193   (Rice)   12
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9
Panicum_virgatum_v202   (Switchgrass)   15
Setaria_italica_v164   (Foxtail millet)   11
Zea_mays_subsp._mays_   (Maize)   8
Zea_mays_v181   (Maize)   8
Sorghum_bicolor_   (Sorghum)   8
Musa_balbisiana   (Balbis banana)   23
Musa_acuminata_22   (Wild Malaysian banana)   20
Amborella_trichopoda_22 12
Physcomitrella_patens 41
Chlamydomonas_reinhardtii_4.0 1
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanophora_paradoxa_ 2
Aureococcus_anophagefferens_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 3

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   14
Hordeum_vulgare_22   (Domesticated barley)   22
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   64

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3
Lotus_japonicus__(Early_assembly) 5
Malus_x_domestica_(Duplicate)   (Apple)   23
Ricinus_communis__(Early_assembly)   (Castor bean)   12
Nicotiana_benthamiana_0.4.4_(Early_draft) 19
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   13
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   13
Phoenix_dactylifera__(Early_draft)   (Date palm)   4
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 271
Uniprot_2018_03_genome 7074
NCBI_2017_08_genome 2868

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