SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 81383,50998 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
50998 - Quinoprotein alcohol dehydrogenase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   0
Otolemur_garnettii_76_3   (Small-eared galago)   1
Sorex_araneus_76_1   (European shrew)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 2
Lottia_gigantea_   (Owl limpet)   0
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 0
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 1
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 1
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Trichoderma_citrinoviride_v1.0 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_acidus_v1.0 1
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 2
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_niger_22 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Candida_tropicalis_MYA-3404_ 0
Candida_parapsilosis_ 0
Candida_guilliermondii_ATCC_6260_ 1
Pichia_pastoris_GS115_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Candida_glabrata_CBS138 0
Ashbya_gossypii_ATCC_10895_ 0
Kluyveromyces_lactis 0
Catenaria_anguillulae_PL171_v1.0 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   0
Gossypium_raimondii_v221 1
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Cucumis_sativus_v122   (Cucumber)   1
Manihot_esculenta_v147   (Cassava)   2
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Aquilegia_coerulea_v195 1
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 6
Brachypodium_distachyon_   (Stiff brome)   3
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 2
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   5
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   1
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Thecamonas_trahens_ATCC_50062_ 1
Neospora_caninum 1
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Trichomonas_vaginalis_ 1
Candidatus_Protochlamydia_amoebophila_UWE25 0

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Strains
Genome     Number
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 1
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Saccharomyces_cerevisiae_Vin13 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Neospora_caninum_Nc-Liverpool_6.2 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Otolemur_garnettii_69_3   (Small-eared galago)   1
Felis_catus_69   (Domestic cat)   0
Sorex_araneus_69_1   (European shrew)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Lotus_japonicus__(Early_assembly) 0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Protozoadb_2010_08_(Protozoadb) 4
STRING_v9.0.5_(STRING) 16
NCBI_2017_08_genome 187
TargetDB__(Targets) 2
Uniprot_2018_03_genome 1035

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