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Domain combinations for 81383,52047,52047 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
52047 - RNI-like
52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Otolemur_garnettii_76_3   (Small-eared galago)   1
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Bos_taurus_76_3.1   (Cattle)   0
Vicugna_pacos_76_1   (Alpaca)   0
Equus_caballus_76_2   (Horse)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 8
Octopus_bimaculoides_280 1
Lottia_gigantea_   (Owl limpet)   1
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_simulans_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Daphnia_pulex_   (Common water flea)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 2
Amphimedon_queenslandica 1
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 1
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Sporobolomyces_roseus_IAM_13481_ 1
Piloderma_croceum_F_1598_v1.0 0
Hydnomerulius_pinastri_v2.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Hebeloma_cylindrosporum_h7_v2.0 0
Agaricus_bisporus_var._bisporus_ 0
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Dichomitus_squalens 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Trichoderma_atroviride_ 0
Trichoderma_virens_Gv29-8_ 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Ajellomyces_dermatitidis_SLH14081_ 1
Aspergillus_wentii_v1.0 0
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Saccharomyces_paradoxus_MIT 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 1
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 6
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 13
Citrus_clementina_v165 2
Citrus_sinensis_v154   (Sweet orange)   6
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 3
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   7
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   3
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   5
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 4
Oryza_nivara_22 3
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   7
Zea_mays_v181   (Maize)   8
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 6
Physcomitrella_patens 5
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Thecamonas_trahens_ATCC_50062_ 0
Naegleria_gruberi_ 6
Candidatus_Amoebophilus_asiaticus_5a2 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Ralstonia_solanacearum_CFBP2957 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Coccidioides_posadasii_str._Silveira_ 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Otolemur_garnettii_69_3   (Small-eared galago)   1
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Equus_caballus_69_2   (Horse)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   1
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 7
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 55
Uniprot_2018_03_genome 2855
NCBI_2017_08_genome 598
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 4

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