SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 82171,69304,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

82171 - DPP6 N-terminal domain-like
69304 - Tricorn protease N-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Candida_guilliermondii_ATCC_6260_ 0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Cucumis_sativus_v122   (Cucumber)   1
Populus_trichocarpa_v156   (Black cottonwood)   0
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Panicum_virgatum_v202   (Switchgrass)   1
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Opitutus_terrae_PB90-1 1
Candidatus_Solibacter_usitatus_Ellin6076 0
Desulfatibacillum_alkenivorans_AK-01 1
Hahella_chejuensis_KCTC_2396 1
Erwinia_amylovora_ATCC_49946 0
Methanohalobium_evestigatum_Z-7303 2

Strains
Genome     Number
Saccharothrix_espanaensis_DSM_44229 0
Listeria_monocytogenes_L99 0
Alteromonas_macleodii_ATCC_27126 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Methanomethylovorans_hollandica_DSM_15978 1

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 1
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 198
NCBI_2017_08_genome 29

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