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Domain combinations for 82861,50182,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

82861 - Mechanosensitive channel protein MscS (YggB), transmembrane region
50182 - Sm-like ribonucleoproteins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Adineta_vaga 0
Proterospongia_sp._ATCC_50818_ 0
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 0
Micromonas_sp._RCC299_ 0
Porphyridium_purpureum_02_2012 0
Bigelowiella_natans_CCMP2755_22 0
Ectocarpus_siliculosus 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 0
Thermobaculum_terrenum_ATCC_BAA-798 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 0
Microcoleus_sp._PCC_7113 0
Halothece_sp._PCC_7418 0
Rivularia_sp._PCC_7116 0
Nostoc_sp._PCC_7524 0
Conexibacter_woesei_DSM_14684 0
Cryptobacterium_curtum_DSM_15641 1
Eggerthella_sp._YY7918 1
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 1
Olsenella_uli_DSM_7084 1
Atopobium_parvulum_DSM_20469 1
Stackebrandtia_nassauensis_DSM_44728 0
Kribbella_flavida_DSM_17836 0
Salinispora_arenicola_CNS-205 0
Salinispora_tropica_CNB-440 0
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Segniliparus_rotundus_DSM_44985 0
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_aurimucosum_ATCC_700975 1
Corynebacterium_efficiens_YS-314 1
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_variabile_DSM_44702 1
Corynebacterium_pseudotuberculosis_316 0
Beutenbergia_cavernae_DSM_12333 0
Xylanimonas_cellulosilytica_DSM_15894 0
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1
Bifidobacterium_dentium_Bd1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Bifidobacterium_bifidum_S17 1
Bifidobacterium_adolescentis_ATCC_15703 1
Finegoldia_magna_ATCC_29328 1
Sulfobacillus_acidophilus_DSM_10332 1
Clostridium_novyi_NT 1
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_owensensis_OL 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_bescii_DSM_6725 1
Coprothermobacter_proteolyticus_DSM_5265 1
Enterococcus_hirae_ATCC_9790 1
Oenococcus_oeni_PSU-1 1
Lactobacillus_rhamnosus_Lc_705 0
Lactobacillus_fermentum_IFO_3956 1
Lactobacillus_amylovorus_GRL1118 1
Lactobacillus_reuteri_DSM_20016 1
Lactobacillus_gasseri_ATCC_33323 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1
Lactobacillus_acidophilus_30SC 1
Pediococcus_claussenii_ATCC_BAA-344 1
Pediococcus_pentosaceus_ATCC_25745 1
Lactococcus_garvieae_ATCC_49156 1
Lactococcus_lactis_subsp._cremoris_MG1363 1
Streptococcus_macedonicus_ACA-DC_198 1
Streptococcus_parauberis_KCTC_11537 1
Streptococcus_mutans_NN2025 1
Kyrpidia_tusciae_DSM_2912 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_polymyxa_M1 0
Solibacillus_silvestris_StLB046 0
Halobacillus_halophilus_DSM_2266 1
Bacillus_sp._JS 1
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_pumilus_SAFR-032 1
Melioribacter_roseus_P3M 1
Chlorobium_limicola_DSM_245 0
Prosthecochloris_aestuarii_DSM_271 0
Niastella_koreensis_GR20-10 0
Rhodothermus_marinus_DSM_4252 0
Candidatus_Amoebophilus_asiaticus_5a2 0
Cyclobacterium_marinum_DSM_745 0
Marivirga_tractuosa_DSM_4126 0
Cytophaga_hutchinsonii_ATCC_33406 0
Runella_slithyformis_DSM_19594 0
Flavobacterium_johnsoniae_UW101 0
Simkania_negevensis_Z 1
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Treponema_primitia_ZAS-2 0
Thermocrinis_albus_DSM_14484 0
Acidithiobacillus_caldus_SM-1 0
Sulfurimonas_denitrificans_DSM_1251 1
Pelobacter_carbinolicus_DSM_2380 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 0
Burkholderia_sp._CCGE1002 0
Acidovorax_sp._KKS102 1
Parvularcula_bermudensis_HTCC2503 0
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 0
Maricaulis_maris_MCS10 1
Ketogulonicigenium_vulgare_Y25 0
Gluconacetobacter_xylinus_NBRC_3288 0
Gluconobacter_oxydans_621H 0
Candidatus_Midichloria_mitochondrii_IricVA 1
Neorickettsia_sennetsu_str._Miyayama 0
Neorickettsia_risticii_str._Illinois 0
Orientia_tsutsugamushi_str._Boryong 1
Rickettsia_bellii_OSU_85-389 1
Oceanimonas_sp._GK1 1
Idiomarina_loihiensis_L2TR 1
Colwellia_psychrerythraea_34H 0
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_oceani_ATCC_19707 1
Legionella_longbeachae_NSW150 1
Edwardsiella_ictaluri_93-146 0
Edwardsiella_tarda_EIB202 0
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Pseudomonas_mendocina_ymp 0
Psychrobacter_sp._G 0
Psychrobacter_sp._PRwf-1 0
Psychrobacter_arcticus_273-4 0
Psychrobacter_cryohalolentis_K5 0
Francisella_noatunensis_subsp._orientalis_str._Toba_04 0
Francisella_sp._TX077308 0
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 0
Candidatus_Caldiarchaeum_subterraneum 1
Acidilobus_saccharovorans_345-15 1
Thermogladius_cellulolyticus_1633 1
Metallosphaera_cuprina_Ar-4 2
Metallosphaera_sedula_DSM_5348 0
Acidianus_hospitalis_W1 0
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Methanocella_arvoryzae_MRE50 1
Methanocella_paludicola_SANAE 1
Methanococcoides_burtonii_DSM_6242 1
Methanocorpusculum_labreanum_Z 1
Methanoculleus_bourgensis_MS2 1
Methanopyrus_kandleri_AV19 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Picrophilus_torridus_DSM_9790 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
Methanocaldococcus_jannaschii_DSM_2661 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Acholeplasma_laidlawii_PG-8A 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Dactylococcopsis_salina_PCC_8305 0
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 1
Cyanobacterium_aponinum_PCC_10605 0
Cyanobacterium_stanieri_PCC_7202 1
Cylindrospermum_stagnale_PCC_7417 0
Adlercreutzia_equolifaciens_DSM_19450 1
Frankia_sp._EuI1c 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_urealyticum_DSM_7111 1
Corynebacterium_argentoratense_DSM_44202 1
Corynebacterium_pseudotuberculosis_258 0
Corynebacterium_pseudotuberculosis_1/06-A 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_thermophilum_RBL67 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Bifidobacterium_animalis_subsp._lactis_Bl12 1
Bifidobacterium_animalis_subsp._lactis_B420 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1
Bifidobacterium_animalis_subsp._lactis_V9 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1
Bifidobacterium_animalis_subsp._lactis_AD011 1
Bifidobacterium_breve_UCC2003 1
Bifidobacterium_asteroides_PRL2011 1
Bifidobacterium_bifidum_PRL2010 1
Bifidobacterium_bifidum_BGN4 1
Actinomyces_odontolyticus_ATCC_17982 0
Sulfobacillus_acidophilus_TPY 1
Lactobacillus_rhamnosus_LOCK908 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_rhamnosus_ATCC_8530 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_johnsonii_N6.2 1
Lactobacillus_johnsonii_DPC_6026 1
Lactobacillus_fermentum_F-6 1
Lactobacillus_fermentum_CECT_5716 1
Lactobacillus_reuteri_TD1 1
Lactobacillus_reuteri_I5007 1
Lactobacillus_reuteri_JCM_1112 1
Lactobacillus_reuteri_SD2112 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1
Pediococcus_pentosaceus_SL4 1
Lactococcus_garvieae_Lg2 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1
Lactococcus_lactis_subsp._lactis_IO-1 1
Lactococcus_lactis_subsp._lactis_CV56 1
Lactococcus_lactis_subsp._lactis_KF147 1
Lactococcus_lactis_subsp._lactis_Il1403 1
Lactococcus_lactis_subsp._cremoris_KW2 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1
Lactococcus_lactis_subsp._cremoris_A76 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1
Lactococcus_lactis_subsp._cremoris_SK11 1
Streptococcus_iniae_SF1 1
Streptococcus_mutans_GS-5 1
Streptococcus_mutans_LJ23 1
Streptococcus_mutans_UA159 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Paenibacillus_sp._Y412MC10 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_infantis_NRRL_B-14911 0
Staphylococcus_pasteuri_SP1 1
Staphylococcus_warneri_SG1 1
Chlorobium_phaeobacteroides_BS1 0
Echinicola_vietnamensis_DSM_17526 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 0
Zymomonas_mobilis_subsp._mobilis_CP4 0
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 0
Zymomonas_mobilis_subsp._mobilis_ZM4 0
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 0
Gluconobacter_oxydans_H24 0
Acetobacter_pasteurianus_386B 0
Orientia_tsutsugamushi_str._Ikeda 1
Rickettsia_bellii_RML369-C 1
Simiduia_agarivorans_SA1_=_DSM_21679 1
Idiomarina_loihiensis_GSL_199 1
Edwardsiella_tarda_C07-087 0
Edwardsiella_tarda_FL6-60 0
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Francisella_noatunensis_subsp._orientalis_LADL--07-285A 0
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 0
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Ferroplasma_acidarmanus_fer1 0

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Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Acholeplasma_laidlawii_PG-8A_(duplicate) 1
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 69
Uniprot_2018_03_genome 6636
NCBI_2017_08_genome 2707

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