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Domain combinations for _gap_,101936,_gap_,54277 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain
54277 - CAD & PB1 domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6
Gossypium_raimondii_v221 35
Citrus_clementina_v165 6
Citrus_sinensis_v154   (Sweet orange)   14
Thellungiella_halophila_v173 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12
Capsella_rubella_v183 9
Arabidopsis_lyrata_   (Lyrate rockcress)   10
Arabidopsis_thaliana_10   (Thale cress)   17
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   7
Phaseolus_vulgaris_v186   (French bean)   7
Glycine_max_v109   (Soybean)   20
Cucumis_sativus_v122   (Cucumber)   11
Fragaria_vesca_   (Wild strawberry)   6
Malus_domestica_v196   (Apple)   9
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   10
Manihot_esculenta_v147   (Cassava)   13
Populus_trichocarpa_v156   (Black cottonwood)   18
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   7
Solanum_lycopersicum_v.2.3   (Tomato)   7
Solanum_tuberosum_   (Potato)   9
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 12
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   8
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   8
Oryza_meridionalis_22 10
Oryza_glumaepatula_22 9
Oryza_glaberrima   (African rice)   6
Oryza_punctata_22 9
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   6
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   12
Oryza_sativa_v193   (Rice)   12
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9
Panicum_virgatum_v202   (Switchgrass)   8
Setaria_italica_v164   (Foxtail millet)   7
Zea_mays_subsp._mays_   (Maize)   15
Zea_mays_v181   (Maize)   15
Sorghum_bicolor_   (Sorghum)   5
Musa_balbisiana   (Balbis banana)   10
Musa_acuminata_22   (Wild Malaysian banana)   12
Amborella_trichopoda_22 1
Physcomitrella_patens 2

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6
Hordeum_vulgare_22   (Domesticated barley)   11
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   12

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   9
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 8
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 60
Uniprot_2018_03_genome 8982
NCBI_2017_08_genome 1034
TargetDB__(Targets) 5

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