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Domain combinations for _gap_,101936,_gap_,54277,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain
54277 - CAD & PB1 domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   4
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7
Gossypium_raimondii_v221 33
Citrus_clementina_v165 8
Citrus_sinensis_v154   (Sweet orange)   11
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   9
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   13
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   16
Phaseolus_vulgaris_v186   (French bean)   14
Glycine_max_v109   (Soybean)   29
Cucumis_sativus_v122   (Cucumber)   9
Fragaria_vesca_   (Wild strawberry)   5
Malus_domestica_v196   (Apple)   10
Prunus_persica_v139   (Peach)   5
Linum_usitatissimum_v200   (Flax)   6
Manihot_esculenta_v147   (Cassava)   14
Populus_trichocarpa_v156   (Black cottonwood)   18
Vitis_vinifera_   (Wine grape)   7
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   10
Actinidia_chinensis_Hongyang_ 11
Aquilegia_coerulea_v195 17
Triticum_urartu_22 7
Triticum_aestivum_22   (Bread wheat)   15
Aegilops_tauschii_22 8
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 13
Oryza_glumaepatula_22 10
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 13
Oryza_nivara_22 12
Oryza_brachyantha_22   (Malo sina)   9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   17
Oryza_sativa_v193   (Rice)   17
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10
Panicum_virgatum_v202   (Switchgrass)   10
Setaria_italica_v164   (Foxtail millet)   13
Zea_mays_subsp._mays_   (Maize)   18
Zea_mays_v181   (Maize)   17
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   16
Musa_acuminata_22   (Wild Malaysian banana)   18
Amborella_trichopoda_22 7
Physcomitrella_patens 2

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6
Hordeum_vulgare_22   (Domesticated barley)   10
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   6

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 4
Malus_x_domestica_(Duplicate)   (Apple)   10
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 15
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
STRING_v9.0.5_(STRING) 62
Uniprot_2018_03_genome 15366
NCBI_2017_08_genome 1218

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