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Domain combinations for _gap_,140990 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

140990 - FtsH protease domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Ovis_aries_76_3.1   (Sheep)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Bombyx_mori_   (Domestic silkworm)   3
Atta_cephalotes_v1.1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Sphaeroforma_arctica_JP610_ 1
Microbotryum_violaceum_22 0
Phanerochaete_chrysosporium_RP-78_2.1 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Verticillium_albo-atrum_VaMs.102_ 1
Glomerella_graminicola_22 1
Nectria_haematococca_mpVI_ 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 1
Kluyveromyces_waltii 1
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 6
Citrus_clementina_v165 9
Citrus_sinensis_v154   (Sweet orange)   10
Thellungiella_halophila_v173 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   7
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   4
Cucumis_sativus_v122   (Cucumber)   7
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   5
Prunus_persica_v139   (Peach)   4
Linum_usitatissimum_v200   (Flax)   5
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   4
Solanum_tuberosum_   (Potato)   4
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 11
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   9
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   3
Oryza_punctata_22 3
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   5
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   3
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 2
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 2
Bigelowiella_natans_CCMP2755_22 3
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 0
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 1
Neospora_caninum 0
Theileria_parva__ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 2
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._CC9311 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 1
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Gloeobacter_violaceus_PCC_7421 2
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Candidatus_Phytoplasma_mali 1
Aster_yellows_witches'-broom_phytoplasma_AYWB 2
Onion_yellows_phytoplasma_OY-M 5
Acidimicrobium_ferrooxidans_DSM_10331 0
Acidothermus_cellulolyticus_11B 0
Frankia_symbiont_of_Datisca_glomerata 1
Frankia_sp._EAN1pec 0
Nocardioides_sp._JS614 1
[Ruminococcus]_torques 1
Moorella_thermoacetica_ATCC_39073 1
Belliella_baltica_DSM_15883 0
Rhodopirellula_baltica_SH_1 1
Cupriavidus_metallidurans_CH34 1
Ralstonia_pickettii_12D 1
Acidovorax_sp._KKS102 0
Thiocystis_violascens_DSM_198 1
Methanosarcina_acetivorans_C2A 1

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Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 0
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Cyanobium_gracile_PCC_6307 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._CC9902 1
Synechococcus_sp._RCC307 1
Synechococcus_sp._CC9605 1
Synechococcus_sp._WH_8102 1
Synechococcus_sp._WH_7803 1
Synechococcus_sp._PCC_7002 1
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 1
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Candidatus_Phytoplasma_solani_tobfin_28409 1
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 1
Candidatus_Phytoplasma_australiense 2
Clostridium_sp._SY8519 1
Variovorax_paradoxus_B4 0
Variovorax_paradoxus_EPS 0
Alteromonas_macleodii_str._'English_Channel_615' 1
Shigella_boydii_Sb227 1
Escherichia_coli_JJ1886 1
Pseudomonas_fluorescens_F113 1

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Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1
Arabidopsis_thaliana_10   (Thale cress)   4

Others
Genome     Number
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3
Lotus_japonicus__(Early_assembly) 5
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   5
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_plasmid_sequences_(Plasmids) 7
Protozoadb_2010_08_(Protozoadb) 1
NCBI_2017_08_genome 1344
TargetDB__(Targets) 5
STRING_v9.0.5_(STRING) 89
Uniprot_2018_03_genome 3813

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