SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,46689,48498 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46689 - Homeodomain-like
48498 - Tetracyclin repressor-like, C-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Medicago_truncatula_   (Barrel medic)   0
Phytophthora_capsici_ 1
Conexibacter_woesei_DSM_14684 1
Slackia_heliotrinireducens_DSM_20476 1
Olsenella_uli_DSM_7084 1
Atopobium_parvulum_DSM_20469 1
Ilumatobacter_coccineus 1
Nakamurella_multipartita_DSM_44233 2
Acidothermus_cellulolyticus_11B 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 2
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_symbiont_of_Datisca_glomerata 2
Frankia_sp._EAN1pec 9
Frankia_alni_ACN14a 2
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 3
Streptomyces_coelicolor_A3(2) 5
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 2
Streptomyces_sp._SirexAA-E 4
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 3
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 4
Streptomyces_scabiei_87.22 3
Actinosynnema_mirum_DSM_43827 1
Saccharopolyspora_erythraea_NRRL_2338 2
Amycolatopsis_mediterranei_U32 1
Propionibacterium_propionicum_F0230a 1
Microlunatus_phosphovorus_NM-1 4
Salinispora_tropica_CNB-440 1
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 3
Actinoplanes_sp._SE50/110 2
Segniliparus_rotundus_DSM_44985 1
Gordonia_polyisoprenivorans_VH2 1
Rhodococcus_jostii_RHA1 6
Rhodococcus_equi_103S 1
Rhodococcus_erythropolis_PR4 0
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 2
Amycolicicoccus_subflavus_DQS3-9A1 0
Mycobacterium_abscessus_ATCC_19977 2
Mycobacterium_sp._JLS 3
Mycobacterium_intracellulare_ATCC_13950 2
Mycobacterium_avium_104 1
Mycobacterium_vanbaalenii_PYR-1 2
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_africanum_GM041182 1
Mycobacterium_tuberculosis_KZN_1435 2
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_gilvum_PYR-GCK 2
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_Br4923 1
Corynebacterium_efficiens_YS-314 2
Corynebacterium_jeikeium_K411 1
Corynebacterium_variabile_DSM_44702 5
Beutenbergia_cavernae_DSM_12333 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Brachybacterium_faecium_DSM_4810 3
Xylanimonas_cellulosilytica_DSM_15894 1
Cellulomonas_fimi_ATCC_484 2
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 2
Kocuria_rhizophila_DC2201 1
Arthrobacter_sp._Rue61a 3
Arthrobacter_sp._FB24 1
Renibacterium_salmoninarum_ATCC_33209 1
Bifidobacterium_longum_subsp._longum_JDM301 1
Actinomyces_sp._F0330 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_castenholzii_DSM_13941 1
Deinococcus_radiodurans_R1 1
Thermaerobacter_marianensis_DSM_12885 1
Alkaliphilus_oremlandii_OhILAs 1
Coprothermobacter_proteolyticus_DSM_5265 0
Bacillus_pumilus_SAFR-032 1
Salinibacter_ruber_M8 1
Turneriella_parva_DSM_21527 1
Treponema_azotonutricium_ZAS-9 1
Desulfomonile_tiedjei_DSM_6799 1
Syntrophobacter_fumaroxidans_MPOB 1
Desulfotalea_psychrophila_LSv54 1
Desulfatibacillum_alkenivorans_AK-01 1
Desulfobacterium_autotrophicum_HRM2 2
Desulfococcus_oleovorans_Hxd3 1
Sorangium_cellulosum_'So_ce_56' 1
Myxococcus_fulvus_HW-1 1
Thauera_sp._MZ1T 1
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 1
Aromatoleum_aromaticum_EbN1 3
Thiomonas_intermedia_K12 1
Rubrivivax_gelatinosus_IL144 0
Burkholderia_rhizoxinica_HKI_454 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 2
Burkholderia_xenovorans_LB400 2
Ralstonia_eutropha_JMP134 2
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 2
Cupriavidus_necator_N-1 1
Ralstonia_pickettii_12D 0
Burkholderia_sp._CCGE1002 3
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_cenocepacia_HI2424 2
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 2
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 3
Delftia_acidovorans_SPH-1 2
Polaromonas_sp._JS666 1
Polaromonas_naphthalenivorans_CJ2 1
Variovorax_paradoxus_S110 1
Acidovorax_sp._KKS102 2
Acidovorax_sp._JS42 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 1
Collimonas_fungivorans_Ter331 1
Janthinobacterium_sp._Marseille 1
Herbaspirillum_seropedicae_SmR1 1
Pusillimonas_sp._T7-7 1
Bordetella_petrii_DSM_12804 1
Asticcacaulis_excentricus_CB_48 1
Caulobacter_sp._K31 0
Caulobacter_crescentus_NA1000 2
Caulobacter_segnis_ATCC_21756 1
Phenylobacterium_zucineum_HLK1 0
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_aromaticivorans_DSM_12444 2
Sphingobium_sp._SYK-6 1
Sphingomonas_sp._MM-1 1
Maricaulis_maris_MCS10 0
Tistrella_mobilis_KA081020-065 4
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 1
Azospirillum_sp._B510 3
Gluconacetobacter_xylinus_NBRC_3288 1
Polymorphum_gilvum_SL003B-26A1 1
Starkeya_novella_DSM_506 1
Xanthobacter_autotrophicus_Py2 1
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_sp._4-46 0
Methylobacterium_nodulans_ORS_2060 0
Methylobacterium_radiotolerans_JCM_2831 1
Parvibaculum_lavamentivorans_DS-1 1
Ochrobactrum_anthropi_ATCC_49188 1
Sinorhizobium_fredii_NGR234 4
Sinorhizobium_medicae_WSM419 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 2
Agrobacterium_tumefaciens_str._C58 1
Agrobacterium_radiobacter_K84 3
Mesorhizobium_opportunistum_WSM2075 1
Hyphomicrobium_sp._MC1 1
Rhodopseudomonas_palustris_BisA53 1
Bradyrhizobium_japonicum_USDA_110 6
Methylocystis_sp._SC2 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_denitrificans_OS217 1
Glaciecola_sp._4H-3-7+YE-5 1
Marinobacter_aquaeolei_VT8 1
Chromohalobacter_salexigens_DSM_3043 1
Methylomicrobium_alcaliphilum 1
Pseudoxanthomonas_suwonensis_11-1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 1
gamma_proteobacterium_HdN1 1
Pantoea_ananatis_LMG_20103 1
Cronobacter_turicensis_z3032 1
Citrobacter_rodentium_ICC168 1
Pseudomonas_sp._TKP 1
Pseudomonas_fluorescens_SBW25 1
Acinetobacter_calcoaceticus_PHEA-2 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Batrachochytrium_dendrobatidis_JAM81_ 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Frankia_sp._EuI1c 7
Frankia_sp._CcI3 1
Nocardiopsis_alba_ATCC_BAA-2165 2
Streptomyces_albus_J1074 2
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 3
Streptomyces_fulvissimus_DSM_40593 3
Streptomyces_venezuelae_ATCC_10712 5
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Saccharothrix_espanaensis_DSM_44229 6
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_KPA171202 1
Actinoplanes_friuliensis_DSM_7358 1
Rhodococcus_erythropolis_CCM2595 2
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 0
Mycobacterium_abscessus_subsp._bolletii_50594 3
Mycobacterium_liflandii_128FXT 2
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 2
Mycobacterium_indicus_pranii_MTCC_9506 2
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 4
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 2
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 2
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_gilvum_Spyr1 0
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_TN 1
Corynebacterium_terpenotabidum_Y-11 1
Corynebacterium_ulcerans_BR-AD22 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1
Bifidobacterium_thermophilum_RBL67 2
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1
Actinomyces_viscosus_C505 2
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Salinibacter_ruber_DSM_13855 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 4
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 2
Burkholderia_sp._CCGE1001 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_MSHR346 2
Burkholderia_pseudomallei_1710b 3
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_ATCC_23344 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 2
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 3
Caulobacter_crescentus_CB15 2
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1
Paracoccus_aminophilus_JCM_7686 1
Acetobacter_pasteurianus_386B 1
Methylobacterium_extorquens_DM4 1
Sinorhizobium_fredii_USDA_257 2
Sinorhizobium_fredii_HH103 1
Rhizobium_tropici_CIAT_899 2
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_japonicum_USDA_6 2
Alcanivorax_dieselolei_B5 3
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Serratia_plymuthica_4Rx13 1
Pantoea_ananatis_LMG_5342 1
Pantoea_ananatis_PA13 1
Cronobacter_sakazakii_ATCC_BAA-894 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Escherichia_coli_ABU_83972 1
Escherichia_coli_UTI89 1
Escherichia_coli_536 1
Enterobacter_cloacae_EcWSU1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 3
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_protegens_CHA0 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
NCBI_plasmid_sequences_(Plasmids) 34
Protein_Data_Bank_(all_PDB_sequenc) 2
STRING_v9.0.5_(STRING) 213
Uniprot_2018_03_genome 22986
NCBI_2017_08_genome 18684
TargetDB__(Targets) 5
PDB_chains_(SCOP_1.75)_(PDB) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]