SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,47384,55874,52172,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
52172 - CheY-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Caenorhabditis_japonica_ 1
Punctularia_strigosozonata_v1.0 0
Neurospora_discreta_FGSC_8579_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Thecamonas_trahens_ATCC_50062_ 0
Paramecium_tetraurelia_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 5
Synechocystis_sp._PCC_6803 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._PCC_6312 1
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 3
Cyanothece_sp._PCC_8802 2
Gloeocapsa_sp._PCC_7428 0
Microcystis_aeruginosa_NIES-843 1
Rivularia_sp._PCC_7116 4
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 2
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 3
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 4
Nostoc_sp._PCC_7524 0
Anabaena_sp._90 0
Streptosporangium_roseum_DSM_43021 0
Nocardioides_sp._JS614 0
Actinoplanes_missouriensis_431 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 0
Ignavibacterium_album_JCM_16511 0
Haliscomenobacter_hydrossis_DSM_1100 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Salinibacter_ruber_M8 0
Belliella_baltica_DSM_15883 0
Cyclobacterium_marinum_DSM_745 1
Fibrella_aestuarina 0
Leadbetterella_byssophila_DSM_17132 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 0
Parabacteroides_distasonis_ATCC_8503 0
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 0
Alistipes_finegoldii_DSM_17242 0
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_helcogenes_P_36-108 0
Bacteroides_vulgatus_ATCC_8482 0
Bacteroides_thetaiotaomicron_VPI-5482 1
Bacteroides_fragilis_YCH46 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Sphingobacterium_sp._21 0
Zunongwangia_profunda_SM-A87 0
Maribacter_sp._HTCC2170 0
Robiginitalea_biformata_HTCC2501 0
Aequorivita_sublithincola_DSM_14238 0
Zobellia_galactanivorans 0
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 0
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_johnsoniae_UW101 0
Isosphaera_pallida_ATCC_43644 0
Planctomyces_limnophilus_DSM_3776 0
Opitutus_terrae_PB90-1 1
Spirochaeta_smaragdinae_DSM_11293 1
Spirochaeta_caldaria_DSM_7334 0
Treponema_azotonutricium_ZAS-9 0
Caldisericum_exile_AZM16c01 1
Candidatus_Chloracidobacterium_thermophilum_B 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Sulfuricurvum_kujiense_DSM_16994 1
Desulfococcus_oleovorans_Hxd3 0
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Desulfovibrio_alaskensis_G20 1
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 1
Dechloromonas_aromatica_RCB 1
Azoarcus_sp._KH32C 1
Azoarcus_sp._BH72 1
Chromobacterium_violaceum_ATCC_12472 0
Methylibium_petroleiphilum_PM1 2
Rubrivivax_gelatinosus_IL144 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Burkholderia_cenocepacia_HI2424 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Verminephrobacter_eiseniae_EF01-2 1
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 2
Polaromonas_naphthalenivorans_CJ2 1
Variovorax_paradoxus_S110 2
Rhodoferax_ferrireducens_T118 1
Acidovorax_sp._KKS102 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 2
Herminiimonas_arsenicoxydans 1
Collimonas_fungivorans_Ter331 1
Janthinobacterium_sp._Marseille 1
Herbaspirillum_seropedicae_SmR1 2
Achromobacter_xylosoxidans 1
Methylotenera_versatilis_301 1
Methylovorus_sp._MP688 1
Methylovorus_glucosetrophus_SIP3-4 1
Methylobacillus_flagellatus_KT 1
Magnetococcus_marinus_MC-1 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_chlorophenolicum_L-1 1
Sphingomonas_sp._MM-1 1
Hirschia_baltica_ATCC_49814 1
Phaeobacter_gallaeciensis_2.10 0
Roseobacter_litoralis_Och_149 1
Roseobacter_denitrificans_OCh_114 1
Tistrella_mobilis_KA081020-065 1
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Granulibacter_bethesdensis_CGDNIH1 1
Acetobacter_pasteurianus_IFO_3283-01 2
Polymorphum_gilvum_SL003B-26A1 1
Micavibrio_aeruginosavorus_ARL-13 0
Starkeya_novella_DSM_506 1
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 1
Methylobacterium_radiotolerans_JCM_2831 1
Sinorhizobium_fredii_NGR234 1
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Agrobacterium_tumefaciens_str._C58 1
Agrobacterium_radiobacter_K84 1
Agrobacterium_sp._H13-3 1
Agrobacterium_vitis_S4 1
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_loti_MAFF303099 0
Methylocella_silvestris_BL2 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Pelagibacterium_halotolerans_B2 1
Rhodomicrobium_vannielii_ATCC_17100 0
Hyphomicrobium_sp._MC1 1
Rhodopseudomonas_palustris_BisA53 1
Bradyrhizobium_japonicum_USDA_110 1
Bradyrhizobium_sp._ORS_278 1
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 1
Tolumonas_auensis_DSM_9187 1
Vibrio_sp._Ex25 1
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Vibrio_furnissii_NCTC_11218 1
Vibrio_vulnificus_MO6-24/O 1
Photobacterium_profundum_SS9 0
Psychromonas_ingrahamii_37 1
Shewanella_denitrificans_OS217 0
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 0
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_nitratireducens_FR1064 0
Marinobacter_adhaerens_HP15 1
Marinobacter_sp._BSs20148 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Hahella_chejuensis_KCTC_2396 0
Alcanivorax_borkumensis_SK2 1
Marinomonas_posidonica_IVIA-Po-181 2
Marinomonas_sp._MWYL1 1
Marinomonas_mediterranea_MMB-1 1
Methylomicrobium_alcaliphilum 2
Methylomonas_methanica_MC09 2
Pseudoxanthomonas_suwonensis_11-1 0
Xanthomonas_albilineans_GPE_PC73 0
Halothiobacillus_neapolitanus_c2 1
Allochromatium_vinosum_DSM_180 0
Thiocystis_violascens_DSM_198 0
gamma_proteobacterium_HdN1 1
Pseudomonas_sp._TKP 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_fluorescens_SBW25 0
Acinetobacter_oleivorans_DR1 1
Acinetobacter_calcoaceticus_PHEA-2 1
Acinetobacter_baumannii_ATCC_17978 1
Acinetobacter_sp._ADP1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 1
Chamaesiphon_minutus_PCC_6605 0
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Dactylococcopsis_salina_PCC_8305 0
Synechococcus_sp._WH_7803 0
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7425 3
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 2
Cyanothece_sp._PCC_8801 3
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 3
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 3
Mycobacterium_kansasii_ATCC_12478 0
Desulfotomaculum_gibsoniae_DSM_7213 1
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Salinibacter_ruber_DSM_13855 0
Echinicola_vietnamensis_DSM_17526 0
Prevotella_dentalis_DSM_3688 0
Alistipes_shahii_WAL_8301 0
Bacteroides_xylanisolvens_XB1A 2
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Nonlabens_dokdonensis_DSW-6 0
Singulisphaera_acidiphila_DSM_18658 0
Treponema_pedis_str._T_A4 0
Desulfobacula_toluolica_Tol2 0
Geobacter_sp._M18 1
Burkholderia_phenoliruptrix_BR3459a 1
Pandoraea_pnomenusa_3kgm 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_cenocepacia_MC0-3 1
Burkholderia_cenocepacia_AU_1054 1
Variovorax_paradoxus_B4 2
Variovorax_paradoxus_EPS 2
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Phaeobacter_gallaeciensis_DSM_17395 0
Leisingera_methylohalidivorans_DSM_14336 0
Acetobacter_pasteurianus_386B 1
Acetobacter_pasteurianus_IFO_3283-12 2
Acetobacter_pasteurianus_IFO_3283-01-42C 2
Acetobacter_pasteurianus_IFO_3283-32 2
Acetobacter_pasteurianus_IFO_3283-26 2
Acetobacter_pasteurianus_IFO_3283-22 2
Acetobacter_pasteurianus_IFO_3283-07 2
Acetobacter_pasteurianus_IFO_3283-03 2
Micavibrio_aeruginosavorus_EPB 0
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 1
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_GR4 1
Sinorhizobium_meliloti_Rm41 1
Sinorhizobium_meliloti_SM11 1
Sinorhizobium_meliloti_BL225C 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Mesorhizobium_australicum_WSM2073 0
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Bradyrhizobium_japonicum_USDA_6 1
Vibrio_sp._EJY3 2
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 1
Vibrio_vulnificus_CMCP6 1
Vibrio_vulnificus_YJ016 1
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alcanivorax_dieselolei_B5 1
Thalassolituus_oleivorans_MIL-1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1
Yersinia_pestis_biovar_Microtus_str._91001 0
Yersinia_pestis_D182038 0
Yersinia_pestis_D106004 0
Yersinia_pestis_Antiqua 0
Yersinia_pestis_KIM10+ 0
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_fluorescens_F113 1
Acinetobacter_genomosp._13TU__RUH2624 1
Acinetobacter_sp.__SH024 1
Acinetobacter_calcoaceticus_ruh2202 1
Acinetobacter_baumannii_ZW85-1 1
Acinetobacter_baumannii_TYTH-1 1
Acinetobacter_baumannii_BJAB0868 1
Acinetobacter_baumannii_BJAB0715 1
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_TCDC-AB0715 1
Acinetobacter_baumannii_D1279779 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_1656-2 1
Acinetobacter_baumannii__ATCC_19606 1
Acinetobacter_baumannii_AB307-0294 1
Acinetobacter_baumannii_AYE 1
Acinetobacter_baumannii_MDR-ZJ06 1
Acinetobacter_baumannii_ACICU 1
Methylophaga_sp._JAM7 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 16
STRING_v9.0.5_(STRING) 114
Uniprot_2018_03_genome 35952
NCBI_2017_08_genome 7215
TargetDB__(Targets) 4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]