SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47459 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47459 - HLH, helix-loop-helix DNA-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   44
Pan_troglodytes_76_2.1.4   (Chimpanzee)   16
Gorilla_gorilla_76_3.1   (Western gorilla)   21
Pongo_abelii_76_2   (Sumatran orangutan)   15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   17
Papio_anubis_76   (Olive baboon)   20
Macaca_mulatta_76_1   (Rhesus monkey)   20
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   22
Otolemur_garnettii_76_3   (Small-eared galago)   18
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   20
Mus_musculus_76_38   (House mouse)   40
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   15
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15
Cavia_porcellus_76_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_76_2   (Rabbit)   14
Ochotona_princeps_76   (American pika)   13
Tupaia_belangeri_76   (Northern tree shrew)   8
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   17
Ovis_aries_76_3.1   (Sheep)   21
Vicugna_pacos_76_1   (Alpaca)   7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   13
Mustela_putorius_furo_76_1.0   (Domestic ferret)   14
Ailuropoda_melanoleuca_76_1   (Giant panda)   18
Canis_familiaris_76_3.1   (Dog)   21
Felis_catus_76_6.2   (Domestic cat)   12
Equus_caballus_76_2   (Horse)   11
Myotis_lucifugus_76_2.0   (Little brown bat)   17
Pteropus_vampyrus_76_1   (Large flying fox)   14
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   11
Procavia_capensis_76_1   (Cape rock hyrax)   9
Loxodonta_africana_76_3   (African savanna elephant)   24
Echinops_telfairi_76   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   19
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   17
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_76_5   (Platypus)   18
Saccoglossus_kowalevskii_v3.0 19
Petromyzon_marinus_76_7.0   (Sea lamprey)   17
Meleagris_gallopavo_76_2   (Turkey)   18
Gallus_gallus_76_4   (Chicken)   14
Anas_platyrhynchos_76_1.0   (Mallard)   17
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   22
Ficedula_albicollis_76_1.0   (Collared flycatcher)   13
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   15
Anolis_carolinensis_76_2.0   (Green anole)   14
Xenopus_laevis_   (African clawed frog)   75
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   25
Latimeria_chalumnae_76_1   (Coelacanth)   25
Lepisosteus_oculatus_76   (Spotted gar)   29
Gadus_morhua_76_1   (Atlantic cod)   20
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   29
Takifugu_rubripes_76_4   (Torafugu)   41
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   23
Oryzias_latipes_76_1   (Japanese medaka)   21
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   23
Poecilia_formosa_76   (Amazon molly)   24
Oreochromis_niloticus_76_1.0   (Nile tilapia)   23
Astyanax_mexicanus_76   (Mexican tetra)   20
Danio_rerio_76_9   (Zebrafish)   36
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   12
Adineta_vaga 14
Octopus_bimaculoides_280 14
Crassostrea_gigas_22   (Pacific oyster)   13
Lottia_gigantea_   (Owl limpet)   8
Helobdella_robusta_ 9
Capitella_sp._I_ 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9
Heliconius_melpomene_   (Postman butterfly)   11
Bombyx_mori_   (Domestic silkworm)   9
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   11
Linepithema_humile_v1.1   (Argentine ant)   13
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10
Solenopsis_invicta_v.2.2.3   (Red fire ant)   11
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11
Atta_cephalotes_v1.1 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   10
Lucilia_cuprina   (Australian sheep blowfly)   8
Drosophila_grimshawi_1.3 9
Drosophila_willistoni_1.3 8
Drosophila_pseudoobscura_2.13 10
Drosophila_persimilis_1.3 9
Drosophila_suzukii 11
Drosophila_yakuba_1.3 10
Drosophila_simulans_1.3 11
Drosophila_sechellia_1.3 11
Drosophila_melanogaster_76_5   (Fruit fly)   16
Drosophila_erecta_1.3 10
Drosophila_ananassae_1.3 11
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 10
Megaselia_scalaris_22 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   10
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   12
Anopheles_darlingi_22   (American malaria mosquito)   10
Anopheles_gambiae_49_3j   (African malaria mosquito)   8
Tribolium_castaneum_3.0   (Red flour beetle)   12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   10
Acyrthosiphon_pisum_   (Pea aphid)   7
Rhodnius_prolixus_22 10
Daphnia_pulex_   (Common water flea)   5
Strigamia_maritima_22 12
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   13
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   13
Pristionchus_pacificus_ 6
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 14
Caenorhabditis_remanei_ 6
Caenorhabditis_elegans_76_235   (Roundworm)   7
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   4
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 11
Nematostella_vectensis_1.0   (Starlet sea anemone)   14
Hydra_vulgaris 7
Amphimedon_queenslandica 2
Trichoplax_adhaerens_ 7
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 7
Conidiobolus_coronatus_NRRL28638_v1.0 5
Mortierella_verticillata_NRRL_6337_ 10
Phycomyces_blakesleeanus_ 16
Rhizopus_oryzae_RA_99-880_ 23
Mucor_circinelloides_ 20
Rhizomucor_miehei_CAU432_ 11
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 2
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 0
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 2
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 4
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 2
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 2
Hebeloma_cylindrosporum_h7_v2.0 4
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 2
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 0
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 6
Magnaporthe_poae_ATCC_64411_22 5
Magnaporthe_grisea_70-15_ 3
Podospora_anserina_ 10
Sporotrichum_thermophile_ATCC_42464_ 5
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 7
Neurospora_discreta_FGSC_8579_ 7
Neurospora_crassa_OR74A_ 6
Cryphonectria_parasitica_   (Chestnut blight fungus)   5
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 5
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 5
Fusarium_graminearum_ 9
Nectria_haematococca_mpVI_ 7
Fusarium_oxysporum_f._sp._lycopersici_4286_ 50
Fusarium_verticillioides_7600_ 7
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 4
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   4
Botrytis_cinerea_B05.10_ 3
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 6
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 8
Cochliobolus_miyabeanus_ATCC_44560_v1.0 8
Cochliobolus_victoriae_FI3_v1.0 8
Cochliobolus_carbonum_26-R-13_v1.0 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 7
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 6
Stagonospora_nodorum_ 5
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 6
Dothistroma_septosporum 6
Septoria_musiva_v1.0 5
Mycosphaerella_fijiensis_CIRAD86_ 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 1
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 4
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 4
Aspergillus_nidulans_FGSC_A4_ 5
Aspergillus_sydowii_v1.0 6
Aspergillus_versicolor_v1.0 7
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 4
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 4
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 4
Aspergillus_oryzae_RIB40_ 5
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 8
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 4
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 5
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 4
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 3
Pichia_pastoris_GS115_ 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 6
Candida_glabrata_CBS138 6
Kluyveromyces_thermotolerans_CBS_6340 3
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 4
Spizellomyces_punctatus_DAOM_BR117_ 2
Selaginella_moellendorffii_ 22
Pinus_taeda   (Loblolly pine)   34
Picea_abies   (Norway spruce)   40
Eucalyptus_grandis_v201   (Rose gum)   25
Theobroma_cacao_B97-61/B2_v1   (Cacao)   15
Gossypium_raimondii_v221 85
Citrus_clementina_v165 32
Citrus_sinensis_v154   (Sweet orange)   46
Thellungiella_halophila_v173 27
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   39
Capsella_rubella_v183 25
Arabidopsis_lyrata_   (Lyrate rockcress)   24
Arabidopsis_thaliana_10   (Thale cress)   36
Carica_papaya_   (Papaya)   17
Medicago_truncatula_   (Barrel medic)   54
Phaseolus_vulgaris_v186   (French bean)   25
Glycine_max_v109   (Soybean)   70
Cucumis_sativus_v122   (Cucumber)   35
Fragaria_vesca_   (Wild strawberry)   18
Malus_domestica_v196   (Apple)   45
Prunus_persica_v139   (Peach)   28
Linum_usitatissimum_v200   (Flax)   24
Manihot_esculenta_v147   (Cassava)   43
Populus_trichocarpa_v156   (Black cottonwood)   35
Vitis_vinifera_   (Wine grape)   12
Mimulus_guttatus_v140   (Spotted monkey flower)   25
Solanum_lycopersicum_v.2.3   (Tomato)   25
Solanum_tuberosum_   (Potato)   47
Actinidia_chinensis_Hongyang_ 33
Aquilegia_coerulea_v195 32
Triticum_urartu_22 24
Triticum_aestivum_22   (Bread wheat)   67
Aegilops_tauschii_22 31
Brachypodium_distachyon_   (Stiff brome)   22
Oryza_barthii_22   (African wild rice)   28
Oryza_meridionalis_22 27
Oryza_glumaepatula_22 32
Oryza_glaberrima   (African rice)   32
Oryza_punctata_22 31
Oryza_nivara_22 35
Oryza_brachyantha_22   (Malo sina)   25
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   41
Oryza_sativa_v193   (Rice)   41
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   25
Panicum_virgatum_v202   (Switchgrass)   70
Setaria_italica_v164   (Foxtail millet)   30
Zea_mays_subsp._mays_   (Maize)   62
Zea_mays_v181   (Maize)   70
Sorghum_bicolor_   (Sorghum)   26
Musa_balbisiana   (Balbis banana)   55
Musa_acuminata_22   (Wild Malaysian banana)   50
Amborella_trichopoda_22 15
Physcomitrella_patens 11
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 0
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 2
Ectocarpus_siliculosus 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Guillardia_theta_CCMP2712_v1.0_ 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   43
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   13
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 4
Saccharomyces_cerevisiae_CBS7960 5
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 5
Saccharomyces_cerevisiae_LalvinQA23 3
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 5
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 3
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 5
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   14
Hordeum_vulgare_22   (Domesticated barley)   65
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   30

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   17
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15
Gorilla_gorilla_69_3.1   (Western gorilla)   16
Pongo_abelii_69_2   (Sumatran orangutan)   15
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14
Macaca_mulatta_69_1   (Rhesus monkey)   17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_69_3   (Small-eared galago)   18
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   21
Mus_musculus_69_38   (House mouse)   17
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   15
Cavia_porcellus_69_3   (Domestic guinea pig)   16
Oryctolagus_cuniculus_69_2   (Rabbit)   14
Ochotona_princeps_69   (American pika)   13
Tupaia_belangeri_69   (Northern tree shrew)   8
Sus_scrofa_69_10.2   (Pig)   18
Bos_taurus_69_3.1   (Cattle)   16
Vicugna_pacos_69_1   (Alpaca)   7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   13
Mustela_putorius_furo_69_1.0   (Domestic ferret)   14
Ailuropoda_melanoleuca_69_1   (Giant panda)   18
Canis_familiaris_69_3.1   (Dog)   17
Felis_catus_69   (Domestic cat)   7
Equus_caballus_69_2   (Horse)   11
Myotis_lucifugus_69_2.0   (Little brown bat)   17
Pteropus_vampyrus_69_1   (Large flying fox)   14
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   11
Procavia_capensis_69_1   (Cape rock hyrax)   9
Loxodonta_africana_69_3   (African savanna elephant)   19
Echinops_telfairi_69   (Small Madagascar hedgehog)   11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   13
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_69_5   (Platypus)   17
Petromyzon_marinus_69_7.0   (Sea lamprey)   13
Meleagris_gallopavo_69_2   (Turkey)   17
Gallus_gallus_69_2   (Chicken)   17
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   20
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   15
Anolis_carolinensis_69_2.0   (Green anole)   14
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   22
Latimeria_chalumnae_69_1   (Coelacanth)   24
Gadus_morhua_69_1   (Atlantic cod)   20
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   25
Takifugu_rubripes_69_4   (Torafugu)   21
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   19
Oryzias_latipes_69_1   (Japanese medaka)   19
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   23
Oreochromis_niloticus_69_1.0   (Nile tilapia)   22
Danio_rerio_69_9   (Zebrafish)   22
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_69   (Vase tunicate)   4
Drosophila_melanogaster_69_5   (Fruit fly)   10
Caenorhabditis_elegans_69_215   (Roundworm)   7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   25

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   41
Homo_sapiens__(NCBI_version)   (Human)   21
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   17
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6
Moniliophthora_perniciosa_FA553__(Genome_survey) 5
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 30
Malus_x_domestica_(Duplicate)   (Apple)   45
Ricinus_communis__(Early_assembly)   (Castor bean)   19
Nicotiana_benthamiana_0.4.4_(Early_draft) 50
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   24
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   25
Phoenix_dactylifera__(Early_draft)   (Date palm)   12
NCBI_viral_sequences_(Viral) 2
Protein_Data_Bank_(all_PDB_sequenc) 6
TargetDB__(Targets) 38
UniProt__viral_sequences_(Viral) 16
STRING_v9.0.5_(STRING) 1025
Uniprot_2018_03_genome 39432
NCBI_2017_08_genome 11463

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