SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47459,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47459 - HLH, helix-loop-helix DNA-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   152
Pan_troglodytes_76_2.1.4   (Chimpanzee)   47
Gorilla_gorilla_76_3.1   (Western gorilla)   72
Pongo_abelii_76_2   (Sumatran orangutan)   48
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   48
Papio_anubis_76   (Olive baboon)   52
Macaca_mulatta_76_1   (Rhesus monkey)   72
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   107
Otolemur_garnettii_76_3   (Small-eared galago)   55
Microcebus_murinus_76_1   (Gray mouse lemur)   25
Rattus_norvegicus_76_5.0   (Norway rat)   57
Mus_musculus_76_38   (House mouse)   104
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   27
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   54
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   38
Cavia_porcellus_76_3   (Domestic guinea pig)   51
Oryctolagus_cuniculus_76_2   (Rabbit)   46
Ochotona_princeps_76   (American pika)   25
Tupaia_belangeri_76   (Northern tree shrew)   20
Sus_scrofa_76_10.2   (Pig)   51
Bos_taurus_76_3.1   (Cattle)   53
Ovis_aries_76_3.1   (Sheep)   41
Vicugna_pacos_76_1   (Alpaca)   12
Tursiops_truncatus_76_1   (Bottlenose dolphin)   39
Mustela_putorius_furo_76_1.0   (Domestic ferret)   46
Ailuropoda_melanoleuca_76_1   (Giant panda)   47
Canis_familiaris_76_3.1   (Dog)   56
Felis_catus_76_6.2   (Domestic cat)   40
Equus_caballus_76_2   (Horse)   38
Myotis_lucifugus_76_2.0   (Little brown bat)   38
Pteropus_vampyrus_76_1   (Large flying fox)   37
Sorex_araneus_76_1   (European shrew)   13
Erinaceus_europaeus_76   (Western European hedgehog)   19
Procavia_capensis_76_1   (Cape rock hyrax)   29
Loxodonta_africana_76_3   (African savanna elephant)   60
Echinops_telfairi_76   (Small Madagascar hedgehog)   25
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   53
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_76_1.0   (Tammar wallaby)   31
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   43
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   51
Ornithorhynchus_anatinus_76_5   (Platypus)   29
Saccoglossus_kowalevskii_v3.0 73
Petromyzon_marinus_76_7.0   (Sea lamprey)   7
Meleagris_gallopavo_76_2   (Turkey)   26
Gallus_gallus_76_4   (Chicken)   34
Anas_platyrhynchos_76_1.0   (Mallard)   14
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   38
Anolis_carolinensis_76_2.0   (Green anole)   35
Xenopus_laevis_   (African clawed frog)   166
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   50
Latimeria_chalumnae_76_1   (Coelacanth)   53
Lepisosteus_oculatus_76   (Spotted gar)   50
Gadus_morhua_76_1   (Atlantic cod)   49
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   58
Takifugu_rubripes_76_4   (Torafugu)   132
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   63
Oryzias_latipes_76_1   (Japanese medaka)   63
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   53
Poecilia_formosa_76   (Amazon molly)   64
Oreochromis_niloticus_76_1.0   (Nile tilapia)   72
Astyanax_mexicanus_76   (Mexican tetra)   51
Danio_rerio_76_9   (Zebrafish)   78
Oikopleura_dioica 12
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   16
Ciona_intestinalis_76   (Vase tunicate)   18
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   26
Adineta_vaga 42
Octopus_bimaculoides_280 23
Crassostrea_gigas_22   (Pacific oyster)   34
Lottia_gigantea_   (Owl limpet)   13
Helobdella_robusta_ 14
Capitella_sp._I_ 18
Danaus_plexippus_OGS1.0   (Monarch butterfly)   20
Heliconius_melpomene_   (Postman butterfly)   11
Bombyx_mori_   (Domestic silkworm)   9
Nasonia_vitripennis_   (Jewel wasp)   13
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   15
Linepithema_humile_v1.1   (Argentine ant)   14
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   16
Solenopsis_invicta_v.2.2.3   (Red fire ant)   11
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   19
Atta_cephalotes_v1.1 15
Camponotus_floridanus_v3.3   (Florida carpenter ant)   13
Lucilia_cuprina   (Australian sheep blowfly)   22
Drosophila_grimshawi_1.3 24
Drosophila_willistoni_1.3 23
Drosophila_pseudoobscura_2.13 23
Drosophila_persimilis_1.3 21
Drosophila_suzukii 16
Drosophila_yakuba_1.3 23
Drosophila_simulans_1.3 19
Drosophila_sechellia_1.3 21
Drosophila_melanogaster_76_5   (Fruit fly)   53
Drosophila_erecta_1.3 22
Drosophila_ananassae_1.3 19
Drosophila_virilis_1.2 21
Drosophila_mojavensis_1.3 23
Megaselia_scalaris_22 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   22
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   20
Anopheles_darlingi_22   (American malaria mosquito)   13
Anopheles_gambiae_49_3j   (African malaria mosquito)   14
Tribolium_castaneum_3.0   (Red flour beetle)   17
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   14
Acyrthosiphon_pisum_   (Pea aphid)   12
Rhodnius_prolixus_22 14
Daphnia_pulex_   (Common water flea)   11
Strigamia_maritima_22 21
Sarcoptes_scabiei 7
Tetranychus_urticae_   (Two-spotted spider mite)   19
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   13
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   12
Meloidogyne_hapla_ 8
Onchocerca_volvulus_22 8
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   14
Caenorhabditis_japonica_ 8
Caenorhabditis_brenneri_ 13
Caenorhabditis_remanei_ 21
Caenorhabditis_elegans_76_235   (Roundworm)   29
Caenorhabditis_briggsae_2 16
Trichinella_spiralis_22 11
Hymenolepis_microstoma_ 20
Echinococcus_multilocularis_ 26
Echinococcus_granulosus_ 22
Taenia_solium_   (Pork tapeworm)   21
Schistosoma_mansoni_ 27
Mnemiopsis_leidyi   (Sea walnut)   11
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 11
Nematostella_vectensis_1.0   (Starlet sea anemone)   11
Hydra_vulgaris 11
Amphimedon_queenslandica 11
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 3
Sphaeroforma_arctica_JP610_ 18
Capsaspora_owczarzaki_ATCC_30864_ 13
Conidiobolus_coronatus_NRRL28638_v1.0 5
Mortierella_verticillata_NRRL_6337_ 14
Phycomyces_blakesleeanus_ 19
Rhizopus_oryzae_RA_99-880_ 25
Mucor_circinelloides_ 18
Rhizomucor_miehei_CAU432_ 17
Malassezia_globosa_CBS_7966_ 10
Sporisorium_reilianum_22 9
Ustilago_maydis_ 12
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5
Melampsora_laricis-populina_ 4
Rhodotorula_graminis_WP1_v1.0 5
Sporobolomyces_roseus_IAM_13481_ 2
Microbotryum_violaceum_22 8
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 9
Piloderma_croceum_F_1598_v1.0 5
Serpula_lacrymans_var._lacrymans_S7.9_ 5
Coniophora_puteana 6
Hydnomerulius_pinastri_v2.0 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 7
Pisolithus_microcarpus_441_v1.0 6
Pisolithus_tinctorius_Marx_270_v1.0 7
Scleroderma_citrinum_Foug_A_v1.0 7
Coprinopsis_cinerea_okayama7_130_v3 8
Pleurotus_ostreatus_   (Oyster mushroom)   6
Amanita_thiersii_Skay4041_v1.0 8
Amanita_muscaria_Koide_v1.0   (Fly agaric)   11
Galerina_marginata_v1.0 9
Hebeloma_cylindrosporum_h7_v2.0 7
Laccaria_bicolor_S238N-H82_ 15
Agaricus_bisporus_var._bisporus_ 6
Schizophyllum_commune_ 8
Stereum_hirsutum_FP-91666_SS1__v1.0 9
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 7
Punctularia_strigosozonata_v1.0 8
Sebacina_vermifera_MAFF_305830_v1.0 5
Fomitiporia_mediterranea_v1.0 8
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 11
Wolfiporia_cocos_MD-104_SS10__v1.0 9
Fomitopsis_pinicolav1.0 13
Fomitopsis_pinicola_FP-58527_SS1_v3.0 11
Phanerochaete_chrysosporium_RP-78_2.1 9
Dichomitus_squalens 8
Trametes_versicolor_v1.0 9
Tremella_mesenterica_   (Witches' butter)   7
Daldinia_eschscholzii_EC12_v1.0 5
Apiospora_montagnei_NRRL_25634_v1.0 7
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 7
Podospora_anserina_ 6
Sporotrichum_thermophile_ATCC_42464_ 6
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 6
Neurospora_tetrasperma_ 6
Neurospora_discreta_FGSC_8579_ 6
Neurospora_crassa_OR74A_ 8
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 5
Acremonium_alcalophilumv_1.0 5
Glomerella_graminicola_22 5
Fusarium_graminearum_ 5
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 6
Trichoderma_asperellum_CBS_433.97_v1.0 7
Trichoderma_atroviride_ 7
Trichoderma_citrinoviride_v1.0 5
Trichoderma_reesei_1.2 6
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4
Trichoderma_harzianum_CBS_226.95_v1.0 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 6
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5
Cochliobolus_victoriae_FI3_v1.0 5
Cochliobolus_carbonum_26-R-13_v1.0 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 6
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 6
Septoria_musiva_v1.0 6
Mycosphaerella_fijiensis_CIRAD86_ 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 7
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_posadasii_RMSCC_3488_ 6
Coccidioides_immitis_RS_ 6
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 6
Arthroderma_benhamiae_CBS_112371_ 6
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 6
Uncinocarpus_reesii_1704_ 6
Aspergillus_zonatus_v1.0 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 5
Penicillium_chrysogenum_v1.0 5
Aspergillus_acidus_v1.0 5
Aspergillus_fumigatus_Af293 5
Aspergillus_brasiliensis_v1.0 5
Aspergillus_nidulans_FGSC_A4_ 8
Aspergillus_sydowii_v1.0 7
Aspergillus_versicolor_v1.0 6
Aspergillus_glaucus 5
Aspergillus_carbonarius_ITEM_5010_ 5
Neosartorya_fischeri_NRRL_181_ 6
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 5
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 5
Aspergillus_niger_22 5
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 4
Aspergillus_clavatus_NRRL_1_ 5
Penicillium_marneffei_ATCC_18224_ 5
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 5
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 3
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 4
Candida_guilliermondii_ATCC_6260_ 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 4
Debaromyces_hansenii 5
Wickerhamomyces_anomalus 4
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 6
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 3
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 6
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 5
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 5
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 8
Allomyces_macrogynus_ATCC_38327_ 21
Spizellomyces_punctatus_DAOM_BR117_ 9
Selaginella_moellendorffii_ 24
Pinus_taeda   (Loblolly pine)   117
Picea_abies   (Norway spruce)   74
Eucalyptus_grandis_v201   (Rose gum)   127
Theobroma_cacao_B97-61/B2_v1   (Cacao)   92
Gossypium_raimondii_v221 312
Citrus_clementina_v165 111
Citrus_sinensis_v154   (Sweet orange)   139
Thellungiella_halophila_v173 128
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   190
Capsella_rubella_v183 124
Arabidopsis_lyrata_   (Lyrate rockcress)   110
Arabidopsis_thaliana_10   (Thale cress)   172
Carica_papaya_   (Papaya)   70
Medicago_truncatula_   (Barrel medic)   184
Phaseolus_vulgaris_v186   (French bean)   149
Glycine_max_v109   (Soybean)   267
Cucumis_sativus_v122   (Cucumber)   135
Fragaria_vesca_   (Wild strawberry)   81
Malus_domestica_v196   (Apple)   179
Prunus_persica_v139   (Peach)   88
Linum_usitatissimum_v200   (Flax)   136
Manihot_esculenta_v147   (Cassava)   129
Populus_trichocarpa_v156   (Black cottonwood)   171
Vitis_vinifera_   (Wine grape)   83
Mimulus_guttatus_v140   (Spotted monkey flower)   94
Solanum_lycopersicum_v.2.3   (Tomato)   112
Solanum_tuberosum_   (Potato)   154
Actinidia_chinensis_Hongyang_ 115
Aquilegia_coerulea_v195 119
Triticum_urartu_22 69
Triticum_aestivum_22   (Bread wheat)   161
Aegilops_tauschii_22 86
Brachypodium_distachyon_   (Stiff brome)   126
Oryza_barthii_22   (African wild rice)   117
Oryza_meridionalis_22 114
Oryza_glumaepatula_22 147
Oryza_glaberrima   (African rice)   99
Oryza_punctata_22 139
Oryza_nivara_22 149
Oryza_brachyantha_22   (Malo sina)   90
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   159
Oryza_sativa_v193   (Rice)   157
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   131
Panicum_virgatum_v202   (Switchgrass)   207
Setaria_italica_v164   (Foxtail millet)   152
Zea_mays_subsp._mays_   (Maize)   214
Zea_mays_v181   (Maize)   227
Sorghum_bicolor_   (Sorghum)   121
Musa_balbisiana   (Balbis banana)   189
Musa_acuminata_22   (Wild Malaysian banana)   193
Amborella_trichopoda_22 53
Physcomitrella_patens 64
Coccomyxa_subellipsoidea_sp._C-169_v2 4
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 2
Volvox_carteri_v199 3
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 2
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 5
Cyanophora_paradoxa_ 2
Ectocarpus_siliculosus 2
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 2
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 4
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 4
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 4
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Guillardia_theta_CCMP2712_v1.0_ 4

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   101
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   44
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   24
Cryptococcus_neoformans_var._grubii_H99_ 7
Cryptococcus_neoformans_B-3501A_ 5
Cryptococcus_neoformans_JEC21_ 5
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 5
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 6
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 5
Histoplasma_capsulatum_G186AR 4
Aspergillus_fumigatus_A1163_ 5
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 4
Saccharomyces_cerevisiae_CLIB382 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 4
Saccharomyces_cerevisiae_VL3 3
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 3
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 7
Batrachochytrium_dendrobatidis_JAM81_ 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   97
Hordeum_vulgare_22   (Domesticated barley)   161
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   120

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   60
Pan_troglodytes_69_2.1.4   (Chimpanzee)   45
Gorilla_gorilla_69_3.1   (Western gorilla)   53
Pongo_abelii_69_2   (Sumatran orangutan)   48
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   47
Macaca_mulatta_69_1   (Rhesus monkey)   50
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   50
Otolemur_garnettii_69_3   (Small-eared galago)   53
Microcebus_murinus_69_1   (Gray mouse lemur)   25
Rattus_norvegicus_69_3.4   (Norway rat)   54
Mus_musculus_69_38   (House mouse)   55
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   27
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   51
Cavia_porcellus_69_3   (Domestic guinea pig)   48
Oryctolagus_cuniculus_69_2   (Rabbit)   38
Ochotona_princeps_69   (American pika)   25
Tupaia_belangeri_69   (Northern tree shrew)   20
Sus_scrofa_69_10.2   (Pig)   44
Bos_taurus_69_3.1   (Cattle)   52
Vicugna_pacos_69_1   (Alpaca)   12
Tursiops_truncatus_69_1   (Bottlenose dolphin)   39
Mustela_putorius_furo_69_1.0   (Domestic ferret)   45
Ailuropoda_melanoleuca_69_1   (Giant panda)   42
Canis_familiaris_69_3.1   (Dog)   50
Felis_catus_69   (Domestic cat)   24
Equus_caballus_69_2   (Horse)   34
Myotis_lucifugus_69_2.0   (Little brown bat)   38
Pteropus_vampyrus_69_1   (Large flying fox)   37
Sorex_araneus_69_1   (European shrew)   13
Erinaceus_europaeus_69   (Western European hedgehog)   19
Procavia_capensis_69_1   (Cape rock hyrax)   29
Loxodonta_africana_69_3   (African savanna elephant)   46
Echinops_telfairi_69   (Small Madagascar hedgehog)   25
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   19
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_69_1.0   (Tammar wallaby)   31
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   39
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   49
Ornithorhynchus_anatinus_69_5   (Platypus)   27
Petromyzon_marinus_69_7.0   (Sea lamprey)   7
Meleagris_gallopavo_69_2   (Turkey)   17
Gallus_gallus_69_2   (Chicken)   25
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   33
Anolis_carolinensis_69_2.0   (Green anole)   31
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   41
Latimeria_chalumnae_69_1   (Coelacanth)   44
Gadus_morhua_69_1   (Atlantic cod)   49
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   50
Takifugu_rubripes_69_4   (Torafugu)   52
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   53
Oryzias_latipes_69_1   (Japanese medaka)   52
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   53
Oreochromis_niloticus_69_1.0   (Nile tilapia)   64
Danio_rerio_69_9   (Zebrafish)   60
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   16
Ciona_intestinalis_69   (Vase tunicate)   18
Drosophila_melanogaster_69_5   (Fruit fly)   22
Caenorhabditis_elegans_69_215   (Roundworm)   12
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   116

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   162
Homo_sapiens__(NCBI_version)   (Human)   86
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   55
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   12
Picea_sitchensis__(Incomplete)   (Sitka spruce)   10
Lotus_japonicus__(Early_assembly) 58
Malus_x_domestica_(Duplicate)   (Apple)   179
Ricinus_communis__(Early_assembly)   (Castor bean)   89
Nicotiana_benthamiana_0.4.4_(Early_draft) 180
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   112
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   112
Phoenix_dactylifera__(Early_draft)   (Date palm)   57
TargetDB__(Targets) 78
STRING_v9.0.5_(STRING) 2669
Uniprot_2018_03_genome 162640
NCBI_2017_08_genome 41663

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