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Domain combinations for _gap_,47459,_gap_,55785,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47459 - HLH, helix-loop-helix DNA-binding domain
55785 - PYP-like sensor domain (PAS domain)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Ochotona_princeps_76   (American pika)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Tetranychus_urticae_   (Two-spotted spider mite)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Monosiga_brevicollis_ 3
Ectocarpus_siliculosus 1
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 3

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   1
Ochotona_princeps_69   (American pika)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2

Others
Genome     Number
STRING_v9.0.5_(STRING) 9
NCBI_2017_08_genome 52
Uniprot_2018_03_genome 715

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