SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47576,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47576 - Calponin-homology domain, CH-domain
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pongo_abelii_76_2   (Sumatran orangutan)   0
Mus_musculus_76_38   (House mouse)   0
Bos_taurus_76_3.1   (Cattle)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Equus_caballus_76_2   (Horse)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Meleagris_gallopavo_76_2   (Turkey)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1

Longest transcript per gene
Genome     Number
Pongo_abelii_69_2   (Sumatran orangutan)   0
Mus_musculus_69_38   (House mouse)   0
Bos_taurus_69_3.1   (Cattle)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Meleagris_gallopavo_69_2   (Turkey)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1

Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 276
NCBI_2017_08_genome 12

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