SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47576,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47576 - Calponin-homology domain, CH-domain
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_mojavensis_1.3 1
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Arabidopsis_thaliana_10   (Thale cress)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Linum_usitatissimum_v200   (Flax)   0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_meridionalis_22 0
Oryza_punctata_22 0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Bathycoccus_prasinos_ 1
Bigelowiella_natans_CCMP2755_22 1

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Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Malus_x_domestica_(Duplicate)   (Apple)   0
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 99
NCBI_2017_08_genome 12

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