SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47943,47353 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47943 - Retrovirus capsid protein, N-terminal core domain
47353 - Retrovirus capsid dimerization domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ovis_aries_76_3.1   (Sheep)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Felis_catus_76_6.2   (Domestic cat)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Gallus_gallus_76_4   (Chicken)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1

Longest transcript per gene
Genome     Number
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0

Others
Genome     Number
NCBI_viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 1
UniProt__viral_sequences_(Viral) 89
NCBI_2017_08_genome 13
Uniprot_2018_03_genome 834
Protein_Data_Bank_(all_PDB_sequenc) 0

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