SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,48056,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48056 - Di-copper centre-containing domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_76_3   (Small-eared galago)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   4
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   3
Bos_taurus_76_3.1   (Cattle)   3
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 3
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_76_2.0   (Green anole)   3
Xenopus_laevis_   (African clawed frog)   6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   3
Lepisosteus_oculatus_76   (Spotted gar)   5
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   4
Takifugu_rubripes_76_4   (Torafugu)   6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6
Oryzias_latipes_76_1   (Japanese medaka)   5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5
Poecilia_formosa_76   (Amazon molly)   5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Octopus_bimaculoides_280 4
Crassostrea_gigas_22   (Pacific oyster)   15
Lottia_gigantea_   (Owl limpet)   1
Capitella_sp._I_ 3
Pristionchus_pacificus_ 4
Meloidogyne_incognita_   (Southern root-knot nematode)   16
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 6
Caenorhabditis_elegans_76_235   (Roundworm)   6
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 1
Schistosoma_mansoni_ 2
Acropora_digitifera_v1.0 1
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 1
Ustilago_maydis_ 0
Sphaerobolus_stellatus_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 0
Laccaria_bicolor_S238N-H82_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Postia_placenta_ 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Daldinia_eschscholzii_EC12_v1.0 2
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 5
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 2
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 5
Fusarium_graminearum_ 5
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 1
Botrytis_cinerea_B05.10_ 3
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 6
Leptosphaeria_maculans_22 5
Setosphaeria_turcica_v1.0 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5
Alternaria_brassicicola_ 6
Cochliobolus_lunatus_m118_v2.0 4
Pyrenophora_teres_f._teres_22 5
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 1
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 1
Aspergillus_sydowii_v1.0 2
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_flavus_NRRL3357_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 6
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 2
Selaginella_moellendorffii_ 12
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6
Gossypium_raimondii_v221 8
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   4
Phaseolus_vulgaris_v186   (French bean)   3
Glycine_max_v109   (Soybean)   10
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   6
Malus_domestica_v196   (Apple)   13
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   7
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   11
Mimulus_guttatus_v140   (Spotted monkey flower)   9
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   8
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 9
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 4
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 3
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   7
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   6
Sorghum_bicolor_   (Sorghum)   8
Musa_balbisiana   (Balbis banana)   6
Musa_acuminata_22   (Wild Malaysian banana)   6
Physcomitrella_patens 3
Ectocarpus_siliculosus 23
Aureococcus_anophagefferens_ 18
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 4
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4
Phytophthora_sojae_1.1 3
Phytophthora_infestans_T30-4_ 3
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 1
Fragilariopsis_cylindrus 2
Emiliania_huxleyi_CCMP1516_ 4
Gloeocapsa_sp._PCC_7428 1
Rivularia_sp._PCC_7116 2
Nostoc_punctiforme_PCC_73102 1
Geodermatophilus_obscurus_DSM_43160 1
Bacillus_atrophaeus_1942 1
Rhodopirellula_baltica_SH_1 1
Granulicella_mallensis_MP5ACTX8 1
Terriglobus_saanensis_SP1PR4 1
Paracoccus_denitrificans_PD1222 1
Azospirillum_lipoferum_4B 1
Methylobacterium_sp._4-46 1
Nitrobacter_hamburgensis_X14 1
Saccharophagus_degradans_2-40 1
Cellvibrio_japonicus_Ueda107 1
Azotobacter_vinelandii_DJ 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_putida_F1 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6
Paracoccidioides_brasiliensis_Pb01_ 2
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 1
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3
Rhizobium_etli_CFN_42 1
Rhodopseudomonas_palustris_HaA2 1
Bradyrhizobium_japonicum_USDA_6 1
Azotobacter_vinelandii_CA6 1
Azotobacter_vinelandii_CA 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_monteilii_SB3101 2
Pseudomonas_monteilii_SB3078 2
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 2
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 2
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_resinovorans_NBRC_106553 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2
Macaca_mulatta_69_1   (Rhesus monkey)   3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   2
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   3
Bos_taurus_69_3.1   (Cattle)   3
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   3
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   2
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   3
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   4
Caenorhabditis_elegans_69_215   (Roundworm)   6

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Loa_loa_v3.3_(Request)   (Eye worm)   4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4
Malus_x_domestica_(Duplicate)   (Apple)   13
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_plasmid_sequences_(Plasmids) 3
TargetDB__(Targets) 5
Protein_Data_Bank_(all_PDB_sequenc) 6
STRING_v9.0.5_(STRING) 213
Uniprot_2018_03_genome 16935
NCBI_2017_08_genome 5532

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