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Domain combinations for _gap_,48150,55811 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48150 - DNA-glycosylase
55811 - Nudix

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   10
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 1
Gallus_gallus_76_4   (Chicken)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Daphnia_pulex_   (Common water flea)   1
Trichinella_spiralis_22 0
Microbotryum_violaceum_22 0
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Gloeophyllum_trabeumv1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 0
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Tremella_mesenterica_   (Witches' butter)   0
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 0
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Cucumis_sativus_v122   (Cucumber)   2
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 1
Triticum_aestivum_22   (Bread wheat)   1
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   1
Amborella_trichopoda_22 1
Physcomitrella_patens 1
Chlorella_variabilis_sp._NC64A_ 1
Bathycoccus_prasinos_ 0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 1
Albugo_laibachii_22 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Phytophthora_sojae_1.1 0
Plasmodium_knowlesi_strain_H_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Saprospira_grandis_str._Lewin 1
Porphyromonas_gingivalis_ATCC_33277 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1
Myxococcus_fulvus_HW-1 1
Azoarcus_sp._KH32C 1
Cupriavidus_metallidurans_CH34 1
Magnetospirillum_magneticum_AMB-1 1
Gluconobacter_oxydans_621H 1
Methylobacterium_chloromethanicum_CM4 1
Parvibaculum_lavamentivorans_DS-1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Mesorhizobium_loti_MAFF303099 1
Bradyrhizobium_japonicum_USDA_110 1
Aggregatibacter_actinomycetemcomitans_D7S-1 1
Pseudoxanthomonas_spadix_BD-a59 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Serratia_sp._AS12 1
Serratia_plymuthica_AS9 1
Klebsiella_pneumoniae_NTUH-K2044 1
Psychrobacter_sp._PRwf-1 1
Psychrobacter_arcticus_273-4 1
Psychrobacter_cryohalolentis_K5 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1
Prochlorococcus_marinus_str._MIT_9211 1
Prochlorococcus_marinus_str._MIT_9303 1
Lactobacillus_casei_LOCK919 1
Lactobacillus_rhamnosus_LOCK900 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1
Streptococcus_suis_T15 1
Streptococcus_suis_SS12 1
Streptococcus_suis_A7 1
Streptococcus_suis_JS14 1
Streptococcus_suis_GZ1 1
Streptococcus_suis_98HAH33 1
Streptococcus_suis_05ZYH33 1
Listeria_monocytogenes_serotype_4b_str._LL195 1
Porphyromonas_gingivalis_W83 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Sorangium_cellulosum_So0157-2 1
Methylobacterium_extorquens_PA1 1
Bradyrhizobium_japonicum_USDA_6 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_KIM10+ 1
Serratia_sp._AS13 1
Serratia_plymuthica_S13 1
Serratia_plymuthica_4Rx13 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Gallus_gallus_69_2   (Chicken)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Danio_rerio_69_9   (Zebrafish)   1
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   11
Homo_sapiens__(NCBI_version)   (Human)   6
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
STRING_v9.0.5_(STRING) 58
Uniprot_2018_03_genome 3744
NCBI_2017_08_genome 928
TargetDB__(Targets) 4
Protozoadb_2010_08_(Protozoadb) 6

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