SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,48371,54695,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48371 - ARM repeat
54695 - POZ domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Trichinella_spiralis_22 1
Rhizomucor_miehei_CAU432_ 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 2
Citrus_clementina_v165 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_thaliana_10   (Thale cress)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Prunus_persica_v139   (Peach)   1
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Aquilegia_coerulea_v195 1
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_nivara_22 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   2
Musa_acuminata_22   (Wild Malaysian banana)   0
Chlorella_vulgaris_ 1
Volvox_carteri_v199 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1

Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Uniprot_2018_03_genome 414
NCBI_2017_08_genome 50
STRING_v9.0.5_(STRING) 4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]