SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,48452,48452,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48452 - TPR-like
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   21
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   6
Macaca_mulatta_76_1   (Rhesus monkey)   7
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_76_3   (Small-eared galago)   6
Microcebus_murinus_76_1   (Gray mouse lemur)   4
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5
Cavia_porcellus_76_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   5
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_76_1   (Giant panda)   4
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   5
Pteropus_vampyrus_76_1   (Large flying fox)   3
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   4
Loxodonta_africana_76_3   (African savanna elephant)   4
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Saccoglossus_kowalevskii_v3.0 12
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   5
Anas_platyrhynchos_76_1.0   (Mallard)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_76_2.0   (Green anole)   5
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   5
Lepisosteus_oculatus_76   (Spotted gar)   4
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   4
Takifugu_rubripes_76_4   (Torafugu)   6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   10
Astyanax_mexicanus_76   (Mexican tetra)   5
Danio_rerio_76_9   (Zebrafish)   12
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10
Adineta_vaga 6
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   2
Lottia_gigantea_   (Owl limpet)   4
Helobdella_robusta_ 1
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 3
Drosophila_suzukii 5
Drosophila_yakuba_1.3 3
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   11
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 2
Daphnia_pulex_   (Common water flea)   2
Strigamia_maritima_22 1
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   1
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   3
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 3
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 2
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 0
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 6
Monosiga_brevicollis_ 2
Capsaspora_owczarzaki_ATCC_30864_ 3
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 4
Phycomyces_blakesleeanus_ 3
Rhizopus_oryzae_RA_99-880_ 3
Mucor_circinelloides_ 3
Rhizomucor_miehei_CAU432_ 4
Malassezia_globosa_CBS_7966_ 6
Sporisorium_reilianum_22 4
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 9
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 2
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 4
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 2
Galerina_marginata_v1.0 9
Hebeloma_cylindrosporum_h7_v2.0 6
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 2
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 7
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 7
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 2
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 5
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 5
Neurospora_discreta_FGSC_8579_ 5
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   5
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 2
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 4
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 3
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 4
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 4
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 4
Septoria_musiva_v1.0 3
Mycosphaerella_fijiensis_CIRAD86_ 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 3
Ajellomyces_dermatitidis_SLH14081_ 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 5
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 6
Aspergillus_fumigatus_Af293 7
Aspergillus_brasiliensis_v1.0 5
Aspergillus_nidulans_FGSC_A4_ 5
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 5
Neosartorya_fischeri_NRRL_181_ 5
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 4
Aspergillus_oryzae_RIB40_ 9
Aspergillus_niger_22 5
Aspergillus_niger_ATCC_1015_ 5
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 3
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 5
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 3
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 4
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 3
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 4
Pinus_taeda   (Loblolly pine)   11
Picea_abies   (Norway spruce)   27
Eucalyptus_grandis_v201   (Rose gum)   9
Theobroma_cacao_B97-61/B2_v1   (Cacao)   11
Gossypium_raimondii_v221 36
Citrus_clementina_v165 12
Citrus_sinensis_v154   (Sweet orange)   4
Thellungiella_halophila_v173 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   10
Capsella_rubella_v183 6
Arabidopsis_lyrata_   (Lyrate rockcress)   8
Arabidopsis_thaliana_10   (Thale cress)   8
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   10
Phaseolus_vulgaris_v186   (French bean)   7
Glycine_max_v109   (Soybean)   9
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   4
Malus_domestica_v196   (Apple)   5
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   7
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   6
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 8
Aquilegia_coerulea_v195 17
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   12
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   8
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 5
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 4
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   11
Panicum_virgatum_v202   (Switchgrass)   4
Setaria_italica_v164   (Foxtail millet)   7
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   8
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 7
Physcomitrella_patens 6
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 4
Volvox_carteri_v199 6
Chlamydomonas_reinhardtii_4.0 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 0
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 4
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 0
Leishmania_mexicana_2.4 3
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 4
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 5
Trypanosoma_brucei_gambiense_v4.1 5
Trypanosoma_brucei_TREU927_v4.1 5
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 1
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 4
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 3
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_infestans_T30-4_ 1
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 4
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 5
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 3
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 3
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 2
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 5
Emiliania_huxleyi_CCMP1516_ 3
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 1
Microcoleus_sp._PCC_7113 3
Trichodesmium_erythraeum_IMS101 2
Rivularia_sp._PCC_7116 3
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 2
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Anabaena_sp._90 2
Nakamurella_multipartita_DSM_44233 0
Geodermatophilus_obscurus_DSM_43160 1
Frankia_alni_ACN14a 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Saccharomonospora_viridis_DSM_43017 1
Microlunatus_phosphovorus_NM-1 1
Rhodococcus_jostii_RHA1 0
Beutenbergia_cavernae_DSM_12333 1
Herpetosiphon_aurantiacus_DSM_785 5
Roseiflexus_sp._RS-1 0
Truepera_radiovictrix_DSM_17093 1
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Deinococcus_maricopensis_DSM_21211 0
Meiothermus_ruber_DSM_1279 1
Desulfosporosinus_orientis_DSM_765 0
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 0
Clostridium_cellulovorans_743B 0
Candidatus_Cloacamonas_acidaminovorans 0
Pelodictyon_phaeoclathratiforme_BU-1 1
Chlorobium_phaeobacteroides_DSM_266 0
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 1
Chitinophaga_pinensis_DSM_2588 0
Salinibacter_ruber_M8 1
Flexibacter_litoralis_DSM_6794 1
Marivirga_tractuosa_DSM_4126 1
Fibrella_aestuarina 1
Runella_slithyformis_DSM_19594 1
Fluviicola_taffensis_DSM_16823 1
Aequorivita_sublithincola_DSM_14238 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_johnsoniae_UW101 1
Candidatus_Protochlamydia_amoebophila_UWE25 2
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 0
Turneriella_parva_DSM_21527 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Brachyspira_murdochii_DSM_12563 2
Brachyspira_pilosicoli_95/1000 0
Treponema_azotonutricium_ZAS-9 2
Treponema_brennaborense_DSM_12168 1
Treponema_paraluiscuniculi_Cuniculi_A 1
Treponema_pallidum_subsp._pallidum_SS14 2
Treponema_denticola_ATCC_35405 1
Spirochaeta_africana_DSM_8902 0
Denitrovibrio_acetiphilus_DSM_12809 1
Hydrogenobacter_thermophilus_TK-6 1
Candidatus_Chloracidobacterium_thermophilum_B 0
Candidatus_Solibacter_usitatus_Ellin6076 3
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_saanensis_SP1PR4 1
Bdellovibrio_bacteriovorus_HD100 1
Sulfurimonas_autotrophica_DSM_16294 1
Wolinella_succinogenes_DSM_1740 1
Helicobacter_felis_ATCC_49179 1
Helicobacter_acinonychis_str._Sheeba 1
Desulfomonile_tiedjei_DSM_6799 0
Desulfatibacillum_alkenivorans_AK-01 1
Desulfococcus_oleovorans_Hxd3 1
Desulfovibrio_piezophilus 1
Lawsonia_intracellularis_PHE/MN1-00 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_alaskensis_G20 1
Geobacter_sp._M21 1
Geobacter_bemidjiensis_Bem 0
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 4
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 2
Myxococcus_fulvus_HW-1 1
Thiomonas_arsenitoxydans 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 1
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_glumae_BGR1 1
Delftia_acidovorans_SPH-1 1
Polaromonas_naphthalenivorans_CJ2 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 2
Comamonas_testosteroni_CNB-2 1
Bordetella_avium_197N 1
Nitrosospira_multiformis_ATCC_25196 1
Magnetococcus_marinus_MC-1 0
Novosphingobium_sp._PP1Y 1
Sphingobium_chlorophenolicum_L-1 1
Sphingomonas_wittichii_RW1 1
Hirschia_baltica_ATCC_49814 1
Pseudovibrio_sp._FO-BEG1 1
Azospirillum_lipoferum_4B 1
Azospirillum_brasilense_Sp245 1
Rickettsia_bellii_OSU_85-389 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Nitrobacter_winogradskyi_Nb-255 1
Cellvibrio_japonicus_Ueda107 1
Oceanimonas_sp._GK1 1
Tolumonas_auensis_DSM_9187 1
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_fischeri_MJ11 1
Vibrio_sp._Ex25 1
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Ferrimonas_balearica_DSM_9799 1
Shewanella_sediminis_HAW-EB3 1
Shewanella_baltica_OS185 0
Shewanella_amazonensis_SB2B 1
Shewanella_frigidimarina_NCIMB_400 1
Colwellia_psychrerythraea_34H 1
Marinobacter_adhaerens_HP15 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Alteromonas_sp._SN2 1
Kangiella_koreensis_DSM_16069 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Erwinia_tasmaniensis_Et1/99 1
Erwinia_pyrifoliae_Ep1/96 0
Klebsiella_variicola_At-22 2
Pseudomonas_entomophila_L48 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_aeruginosa_UCBPP-PA14 2
Pseudomonas_sp._VLB120 1
Staphylothermus_marinus_F1 1
Methanosarcina_barkeri_str._Fusaro 1
Thermoplasma_acidophilum_DSM_1728 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 5
Histoplasma_capsulatum_H143 5
Histoplasma_capsulatum_H88 5
Histoplasma_capsulatum_G186AR 5
Aspergillus_fumigatus_A1163_ 5
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 2
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11
Hordeum_vulgare_22   (Domesticated barley)   14
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Trypanosoma_brucei_Lister_427_v4.1 4
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_Dd2_ 1
Chroococcidiopsis_thermalis_PCC_7203 1
Synechococcus_sp._PCC_7002 1
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 3
Arthrospira_platensis_NIES-39 2
Cyanothece_sp._PCC_7822 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 3
Anabaena_cylindrica_PCC_7122 1
Frankia_sp._CcI3 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 1
Thermus_thermophilus_HB8 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_Bt407 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_G9842 0
Chlorobium_phaeobacteroides_BS1 1
Porphyromonas_gingivalis_W83 1
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Brachyspira_pilosicoli_WesB 0
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Treponema_pedis_str._T_A4 1
Treponema_pallidum_str._Fribourg-Blanc 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1
Treponema_pallidum_subsp._pallidum_DAL-1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1
Hydrogenobacter_thermophilus_TK-6 1
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 0
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 0
Campylobacter_jejuni_subsp._jejuni_M1 0
Campylobacter_jejuni_subsp._jejuni_IA3902 0
Campylobacter_jejuni_subsp._jejuni_81116 0
Lawsonia_intracellularis_N343 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Geobacter_sp._M18 0
Sorangium_cellulosum_So0157-2 2
Anaeromyxobacter_sp._K 1
Anaeromyxobacter_dehalogenans_2CP-C 1
Myxococcus_stipitatus_DSM_14675 0
Burkholderia_phenoliruptrix_BR3459a 1
Pandoraea_pnomenusa_3kgm 1
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._CCGE1001 1
Burkholderia_mallei_ATCC_23344 0
Zymomonas_mobilis_subsp._mobilis_ZM4 1
Rickettsia_bellii_RML369-C 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_fischeri_ES114 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_OS678 0
Shewanella_baltica_OS195 0
Glaciecola_psychrophila_170 0
Stenotrophomonas_maltophilia_R551-3 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Serratia_liquefaciens_ATCC_27592 1
Erwinia_pyrifoliae_DSM_12163 0
Raoultella_ornithinolytica_B6 1
Klebsiella_pneumoniae_KCTC_2242 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1
Escherichia_coli_E._coli_PMV-1 1
Escherichia_coli_JJ1886 1
Escherichia_coli_NA114 1
Escherichia_coli_str._'clone_D_i2' 1
Escherichia_coli_str._'clone_D_i14' 1
Escherichia_coli_IHE3034 1
Escherichia_coli_O83:H1_str._NRG_857C 1
Escherichia_coli_ABU_83972 1
Escherichia_coli_LF82 1
Escherichia_coli_ED1a 1
Escherichia_coli_S88 1
Escherichia_coli_APEC_O1 1
Escherichia_coli_536 2
Escherichia_coli_CFT073 1
Enterobacter_cloacae_EcWSU1 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_aeruginosa_SCV20265 2
Pseudomonas_aeruginosa_MTB-1 2
Pseudomonas_aeruginosa_LES431 2
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 2
Pseudomonas_aeruginosa_PA1R 2
Pseudomonas_aeruginosa_PA1 2
Pseudomonas_aeruginosa_DK2 2
Pseudomonas_aeruginosa_NCGM2.S1 2
Pseudomonas_aeruginosa_M18 2
Pseudomonas_aeruginosa_LESB58 2
Pseudomonas_aeruginosa_PA7 2
Pseudomonas_aeruginosa_PAO1 2
Acinetobacter_baumannii_TYTH-1 1
Acinetobacter_baumannii_BJAB0868 1
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_TCDC-AB0715 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_1656-2 1
Acinetobacter_baumannii_MDR-ZJ06 1
Natronomonas_moolapensis_8.8.11 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   6
Microcebus_murinus_69_1   (Gray mouse lemur)   4
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   5
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   5
Equus_caballus_69_2   (Horse)   6
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   3
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   4
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   2
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_69_2.0   (Green anole)   4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   8
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   8
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   4
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   7

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   22
Homo_sapiens__(NCBI_version)   (Human)   11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8
Loa_loa_v3.3_(Request)   (Eye worm)   2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 7
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 11
Protozoadb_2010_08_(Protozoadb) 58
STRING_v9.0.5_(STRING) 513
Uniprot_2018_03_genome 58104
NCBI_2017_08_genome 17247
Core_Eukaryotic_Genes_458_(CEGMA) 6
Protein_Data_Bank_(all_PDB_sequenc) 25
TargetDB__(Targets) 27

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