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Domain combinations for _gap_,48592,54849,52029 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48592 - GroEL equatorial domain-like
54849 - GroEL-intermediate domain like
52029 - GroEL apical domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ochotona_princeps_76   (American pika)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Helobdella_robusta_ 0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_suzukii 0
Drosophila_ananassae_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Strigamia_maritima_22 0
Sarcoptes_scabiei 0
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Trichinella_spiralis_22 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Acropora_digitifera_v1.0 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 0
Rhizomucor_miehei_CAU432_ 0
Piloderma_croceum_F_1598_v1.0 0
Phanerochaete_chrysosporium_RP-78_2.1 0
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Glomerella_graminicola_22 0
Leptosphaeria_maculans_22 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Alternaria_brassicicola_ 0
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Candida_parapsilosis_ 0
Pichia_pastoris_GS115_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Entamoeba_dispar_1.2 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_lucimarinus_CCE9901_ 0
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Cyanophora_paradoxa_ 0
Trypanosoma_congolense_2.4 1
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_vexans_DAOM_BR484_22 0
Hyaloperonospora_arabidopsidis_22 0
Fragilariopsis_cylindrus 0
Perkinsus_marinus_ATCC_50983_ 0
Cryptosporidium_hominis 0
Cryptosporidium_parvum_Iowa_II 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Rothia_mucilaginosa_DY-18 0
Rhodopirellula_baltica_SH_1 0
Haloarcula_marismortui_ATCC_43049 0
Halobacterium_sp._NRC-1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Plasmodium_falciparum_HB3_ 0
Saccharothrix_espanaensis_DSM_44229 0
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 0
Haloarcula_hispanica_N601 0

Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Guillardia_theta_(nucleomorph) 0
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 5
Uniprot_2018_03_genome 150

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