SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,49265,_gap_,49265,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49265 - Fibronectin type III
49265 - Fibronectin type III

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   4
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   6
Mus_musculus_76_38   (House mouse)   5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   3
Bos_taurus_76_3.1   (Cattle)   3
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   2
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   2
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   2
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   8
Takifugu_rubripes_76_4   (Torafugu)   10
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8
Poecilia_formosa_76   (Amazon molly)   4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   5
Danio_rerio_76_9   (Zebrafish)   5
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   16
Adineta_vaga 0
Octopus_bimaculoides_280 6
Crassostrea_gigas_22   (Pacific oyster)   7
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 4
Capitella_sp._I_ 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 1
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 0
Onchocerca_volvulus_22 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 4
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   5
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 1
Amphimedon_queenslandica 39
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 0
Capsaspora_owczarzaki_ATCC_30864_ 1
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Selaginella_moellendorffii_ 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Micromonas_sp._RCC299_ 0
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 1
Cyanophora_paradoxa_ 12
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 0
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 3
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 1
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 3
Symbiodinium_minutum_clade_B1_v1.2 3
Guillardia_theta_CCMP2712_v1.0_ 4
Emiliania_huxleyi_CCMP1516_ 1
Eggerthella_sp._YY7918 1
Ilumatobacter_coccineus 0
Nakamurella_multipartita_DSM_44233 2
Geodermatophilus_obscurus_DSM_43160 1
Frankia_alni_ACN14a 1
Propionibacterium_propionicum_F0230a 0
Salinispora_tropica_CNB-440 0
Verrucosispora_maris_AB-18-032 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 0
Sanguibacter_keddieii_DSM_10542 0
Leifsonia_xyli_subsp._xyli_str._CTCB07 0
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 0
Brachybacterium_faecium_DSM_4810 1
Xylanimonas_cellulosilytica_DSM_15894 0
Cellulomonas_flavigena_DSM_20109 0
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_aurescens_TC1 1
Arthrobacter_arilaitensis_Re117 1
Arthrobacter_sp._Rue61a 0
Herpetosiphon_aurantiacus_DSM_785 0
Deinococcus_gobiensis_I-0 1
Deinococcus_deserti_VCD115 1
Clostridium_clariflavum_DSM_19732 1
Clostridium_cellulolyticum_H10 1
Clostridium_thermocellum_ATCC_27405 0
Ruminococcus_albus_7 0
Desulfosporosinus_acidiphilus_SJ4 0
Desulfosporosinus_orientis_DSM_765 0
Dehalobacter_sp._DCA 1
Dehalobacter_sp._CF 1
Clostridium_lentocellum_DSM_5427 0
Eubacterium_rectale_ATCC_33656 1
Coprococcus_sp._ART55/1 2
Roseburia_intestinalis 2
Clostridium_sp._BNL1100 1
Clostridium_cellulovorans_743B 1
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_owensensis_OL 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 2
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 1
Bacillus_selenitireducens_MLS10 1
Lysinibacillus_sphaericus_C3-41 1
Candidatus_Cloacamonas_acidaminovorans 2
Melioribacter_roseus_P3M 1
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 2
Leadbetterella_byssophila_DSM_17132 3
Dyadobacter_fermentans_DSM_18053 2
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 2
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Alistipes_finegoldii_DSM_17242 1
Fluviicola_taffensis_DSM_16823 1
Owenweeksia_hongkongensis_DSM_17368 1
Croceibacter_atlanticus_HTCC2559 1
Zobellia_galactanivorans 2
Cellulophaga_algicola_DSM_14237 1
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 0
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 1
Marinitoga_piezophila_KA3 0
Mesotoga_prima_MesG1.Ag.4.2 0
Kosmotoga_olearia_TBF_19.5.1 0
Fervidobacterium_pennivorans_DSM_9078 0
Fervidobacterium_nodosum_Rt17-B1 0
Caldisericum_exile_AZM16c01 0
Candidatus_Methylomirabilis_oxyfera 1
Campylobacter_sp._03-427 1
Campylobacter_fetus_subsp._fetus_82-40 1
Sulfuricurvum_kujiense_DSM_16994 1
Sulfurimonas_autotrophica_DSM_16294 1
Sulfurimonas_denitrificans_DSM_1251 1
Syntrophus_aciditrophicus_SB 0
Desulfatibacillum_alkenivorans_AK-01 0
Geobacter_daltonii_FRC-32 0
Geobacter_uraniireducens_Rf4 0
Geobacter_sulfurreducens_KN400 0
Geobacter_metallireducens_GS-15 0
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 1
Thiomonas_arsenitoxydans 1
Leptothrix_cholodnii_SP-6 1
Cellvibrio_japonicus_Ueda107 0
Shewanella_denitrificans_OS217 0
Shewanella_oneidensis_MR-1 0
Shewanella_baltica_OS185 0
Shewanella_violacea_DSS12 0
Shewanella_putrefaciens_CN-32 0
Glaciecola_sp._4H-3-7+YE-5 0
Cenarchaeum_symbiosum_A 0
Nitrosopumilus_maritimus_SCM1 0
Methanohalophilus_mahii_DSM_5219 1
Halogeometricum_borinquense_DSM_11551 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Trypanosoma_brucei_Lister_427_v4.1 0
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_orientalis_HCCB10007 0
Actinoplanes_friuliensis_DSM_7358 0
Leifsonia_xyli_subsp._cynodontis_DSM_46306 0
Clavibacter_michiganensis_subsp._sepedonicus 0
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 0
Actinomyces_odontolyticus_ATCC_17982 1
Eubacterium_siraeum_V10Sc8a 0
Clostridium_thermocellum_DSM_1313 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Ruminococcus_champanellensis_18P13 0
Desulfitobacterium_hafniense_DCB-2 0
Roseburia_intestinalis_XB6B4 1
Clostridium_saccharobutylicum_DSM_13864 0
Thermobacillus_composti_KWC4 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Emticicia_oligotrophica_DSM_17448 1
Prevotella_dentalis_DSM_3688 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Singulisphaera_acidiphila_DSM_18658 0
Desulfobacula_toluolica_Tol2 1
Geobacter_sulfurreducens_PCA 0
Simiduia_agarivorans_SA1_=_DSM_21679 1
Shewanella_sp._ANA-3 0
Stenotrophomonas_maltophilia_D457 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   2
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   3
Felis_catus_69   (Domestic cat)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   2
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4
Homo_sapiens__(NCBI_version)   (Human)   3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
NCBI_plasmid_sequences_(Plasmids) 3
Protozoadb_2010_08_(Protozoadb) 0
PDB_chains_(SCOP_1.75)_(PDB) 1
NCBI_viral_sequences_(Viral) 5
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 107
Uniprot_2018_03_genome 18837
NCBI_2017_08_genome 3757

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