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  Home > SCOP hierarchy > Domain combination - _gap_,49785,49303,51445

Domain combinations for _gap_,49785,49303,51445 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49785 - Galactose-binding domain-like
49303 - beta-Galactosidase/glucuronidase domain
51445 - (Trans)glycosidases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Rattus_norvegicus_76_5.0   (Norway rat)   0
Saccoglossus_kowalevskii_v3.0 0
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Nasonia_vitripennis_   (Jewel wasp)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 2
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 2
Drosophila_suzukii 2
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 2
Anopheles_darlingi_22   (American malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Rhodnius_prolixus_22 1
Strigamia_maritima_22 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Onchocerca_volvulus_22 0
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 3
Wallemia_sebi_v1.0 1
Hydnomerulius_pinastri_v2.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Galerina_marginata_v1.0 0
Schizophyllum_commune_ 1
Daldinia_eschscholzii_EC12_v1.0 2
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 1
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 2
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 2
Stagonospora_nodorum_ 2
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 2
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Arthroderma_benhamiae_CBS_112371_ 0
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_flavus_NRRL3357_ 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   1
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Setaria_italica_v164   (Foxtail millet)   0
Musa_balbisiana   (Balbis banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_vulgaris_ 3
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 1
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 0
Symbiodinium_minutum_clade_B1_v1.2 0
Trichomonas_vaginalis_ 1
Emiliania_huxleyi_CCMP1516_ 1
Thermobaculum_terrenum_ATCC_BAA-798 1
Gloeocapsa_sp._PCC_7428 1
Conexibacter_woesei_DSM_14684 1
Eggerthella_sp._YY7918 1
Eggerthella_lenta_DSM_2243 1
Coriobacterium_glomerans_PW2 1
Catenulispora_acidiphila_DSM_44928 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Actinosynnema_mirum_DSM_43827 0
Saccharomonospora_viridis_DSM_43017 0
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 0
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 0
Segniliparus_rotundus_DSM_44985 0
Mycobacterium_rhodesiae_NBB3 1
Microbacterium_testaceum_StLB037 0
Kocuria_rhizophila_DC2201 0
Arthrobacter_sp._FB24 0
Bifidobacterium_animalis_subsp._lactis_Bl-04 0
Bifidobacterium_dentium_Bd1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 0
Bifidobacterium_bifidum_S17 0
Bifidobacterium_adolescentis_ATCC_15703 1
Clostridium_phytofermentans_ISDg 1
Clostridium_perfringens_ATCC_13124 0
Tepidanaerobacter_acetatoxydans_Re1 0
Streptococcus_sp._I-P16 0
Streptococcus_sp._I-G2 0
Streptococcus_intermedius_JTH08 0
Streptococcus_pseudopneumoniae_IS7493 0
Streptococcus_mitis_B6 0
Streptococcus_parasanguinis_ATCC_15912 0
Streptococcus_pneumoniae_P1031 0
Streptococcus_oralis_Uo5 0
Streptococcus_gordonii_str._Challis_substr._CH1 0
Paenibacillus_mucilaginosus_3016 0
Bacillus_selenitireducens_MLS10 0
Bacillus_megaterium_DSM_319 0
Melioribacter_roseus_P3M 1
Haliscomenobacter_hydrossis_DSM_1100 0
Niastella_koreensis_GR20-10 2
Chitinophaga_pinensis_DSM_2588 3
Rhodothermus_marinus_DSM_4252 0
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 1
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 2
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 1
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Odoribacter_splanchnicus_DSM_20712 0
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 0
Porphyromonas_gingivalis_ATCC_33277 0
Alistipes_finegoldii_DSM_17242 1
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_helcogenes_P_36-108 0
Bacteroides_vulgatus_ATCC_8482 0
Bacteroides_thetaiotaomicron_VPI-5482 2
Bacteroides_fragilis_YCH46 0
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Sphingobacterium_sp._21 2
Zunongwangia_profunda_SM-A87 1
Gramella_forsetii_KT0803 0
Maribacter_sp._HTCC2170 0
Zobellia_galactanivorans 0
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_lytica_DSM_7489 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Capnocytophaga_canimorsus_Cc5 0
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Phycisphaera_mikurensis_NBRC_102666 0
Coraliomargarita_akajimensis_DSM_45221 0
Opitutus_terrae_PB90-1 1
Akkermansia_muciniphila_ATCC_BAA-835 0
Sphaerochaeta_globus_str._Buddy 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 0
Terriglobus_saanensis_SP1PR4 0
Terriglobus_roseus_DSM_18391 1
Acidobacterium_capsulatum_ATCC_51196 0
Stigmatella_aurantiaca_DW4/3-1 0
Burkholderia_rhizoxinica_HKI_454 0
Burkholderia_phytofirmans_PsJN 0
Burkholderia_xenovorans_LB400 0
Burkholderia_sp._CCGE1002 0
Burkholderia_gladioli_BSR3 0
Asticcacaulis_excentricus_CB_48 1
Brevundimonas_subvibrioides_ATCC_15264 0
Caulobacter_sp._K31 0
Caulobacter_segnis_ATCC_21756 0
Novosphingobium_aromaticivorans_DSM_12444 0
Pseudovibrio_sp._FO-BEG1 1
Ruegeria_sp._TM1040 1
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 0
Vibrio_cholerae_O395 0
Psychromonas_sp._CNPT3 0
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 0
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_sediminis_HAW-EB3 0
Shewanella_pealeana_ATCC_700345 0
Pseudoalteromonas_atlantica_T6c 0
Glaciecola_sp._4H-3-7+YE-5 0
Pseudoxanthomonas_suwonensis_11-1 0
Stenotrophomonas_maltophilia_K279a 0
Xylella_fastidiosa_M23 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Cronobacter_turicensis_z3032 0
Cronobacter_sakazakii_ES15 0
Escherichia_fergusonii_ATCC_35469 0
Haloterrigena_turkmenica_DSM_5511 0
Halalkalicoccus_jeotgali_B3 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Aspergillus_fumigatus_A1163_ 1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Oscillatoria_nigro-viridis_PCC_7112 0
Mycoplasma_cynos_C142 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_collinus_Tu_365 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_orientalis_HCCB10007 0
Actinoplanes_friuliensis_DSM_7358 0
Gardnerella_vaginalis_HMP9231 0
Gardnerella_vaginalis_ATCC_14019 0
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 0
Bifidobacterium_animalis_subsp._lactis_Bl12 0
Bifidobacterium_animalis_subsp._lactis_B420 0
Bifidobacterium_animalis_subsp._lactis_BLC1 0
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 0
Bifidobacterium_animalis_subsp._lactis_Bi-07 0
Bifidobacterium_animalis_subsp._lactis_V9 0
Bifidobacterium_animalis_subsp._lactis_DSM_10140 0
Bifidobacterium_animalis_subsp._lactis_AD011 0
Bifidobacterium_breve_UCC2003 0
Bifidobacterium_asteroides_PRL2011 0
Bifidobacterium_bifidum_PRL2010 0
Bifidobacterium_bifidum_BGN4 0
Chthonomonas_calidirosea_T49 0
Deinococcus_peraridilitoris_DSM_19664 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 0
Candidatus_Arthromitus_sp._SFB-mouse-Yit 0
Enterococcus_faecium_DO 1
Lactobacillus_plantarum_subsp._plantarum_P-8 2
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_parasanguinis_FW213 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_ST556 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_SPN994039 0
Streptococcus_pneumoniae_SPN994038 0
Streptococcus_pneumoniae_SPN034183 0
Streptococcus_pneumoniae_SPN034156 0
Streptococcus_pneumoniae_INV104 0
Streptococcus_pneumoniae_OXC141 0
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_CGSP14 0
Streptococcus_pneumoniae_G54 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_70585 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_pneumoniae_R6 0
Streptococcus_pneumoniae_TIGR4 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Rhodothermus_marinus_SG0.5JP17-172 0
Echinicola_vietnamensis_DSM_17526 1
Prevotella_sp._oral_taxon_299_str._F0039 0
Prevotella_dentalis_DSM_3688 0
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Alistipes_shahii_WAL_8301 0
Bacteroides_xylanisolvens_XB1A 2
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Singulisphaera_acidiphila_DSM_18658 0
Burkholderia_phenoliruptrix_BR3459a 0
Burkholderia_sp._YI23 0
Burkholderia_sp._CCGE1003 0
Burkholderia_sp._CCGE1001 0
Burkholderia_lata 0
Vibrio_vulnificus_YJ016 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_MJ-1236 0
Glaciecola_psychrophila_170 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_M12 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Cronobacter_sakazakii_CMCC_45402 0
Cronobacter_sakazakii_SP291 0
Cronobacter_sakazakii_ATCC_BAA-894 0
Escherichia_coli_UTI89 0

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Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   0
Gallus_gallus_69_2   (Chicken)   1
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Drosophila_melanogaster_69_5   (Fruit fly)   2
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 2
TargetDB__(Targets) 2
Protein_Data_Bank_(all_PDB_sequenc) 8
STRING_v9.0.5_(STRING) 52
Uniprot_2018_03_genome 14680
PDB_chains_(SCOP_1.75)_(PDB) 0
NCBI_2017_08_genome 1405
Protozoadb_2010_08_(Protozoadb) 2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.