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Domain combinations for _gap_,50156,_gap_,52540,_gap_,90257,_gap_,90257,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50156 - PDZ domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
90257 - Myosin rod fragments
90257 - Myosin rod fragments

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   2
Rattus_norvegicus_76_5.0   (Norway rat)   1
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Amphimedon_queenslandica 1

Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1

Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   1
Gallus_gallus_69_2   (Chicken)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 1813
NCBI_2017_08_genome 142

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