SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50249,_gap_,52540,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50249 - Nucleic acid-binding proteins
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   19
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_76_3.1   (Western gorilla)   11
Pongo_abelii_76_2   (Sumatran orangutan)   8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6
Papio_anubis_76   (Olive baboon)   10
Macaca_mulatta_76_1   (Rhesus monkey)   10
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_76_3   (Small-eared galago)   8
Microcebus_murinus_76_1   (Gray mouse lemur)   5
Rattus_norvegicus_76_5.0   (Norway rat)   8
Mus_musculus_76_38   (House mouse)   12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8
Cavia_porcellus_76_3   (Domestic guinea pig)   9
Oryctolagus_cuniculus_76_2   (Rabbit)   10
Ochotona_princeps_76   (American pika)   5
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   5
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   8
Vicugna_pacos_76_1   (Alpaca)   3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   8
Mustela_putorius_furo_76_1.0   (Domestic ferret)   9
Ailuropoda_melanoleuca_76_1   (Giant panda)   9
Canis_familiaris_76_3.1   (Dog)   9
Felis_catus_76_6.2   (Domestic cat)   9
Equus_caballus_76_2   (Horse)   8
Myotis_lucifugus_76_2.0   (Little brown bat)   10
Pteropus_vampyrus_76_1   (Large flying fox)   5
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   6
Loxodonta_africana_76_3   (African savanna elephant)   12
Echinops_telfairi_76   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 9
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   9
Gallus_gallus_76_4   (Chicken)   9
Anas_platyrhynchos_76_1.0   (Mallard)   8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   8
Xenopus_laevis_   (African clawed frog)   58
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   11
Gadus_morhua_76_1   (Atlantic cod)   8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7
Takifugu_rubripes_76_4   (Torafugu)   16
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   13
Oryzias_latipes_76_1   (Japanese medaka)   9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8
Poecilia_formosa_76   (Amazon molly)   10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   10
Astyanax_mexicanus_76   (Mexican tetra)   7
Danio_rerio_76_9   (Zebrafish)   17
Oikopleura_dioica 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11
Ciona_intestinalis_76   (Vase tunicate)   7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4
Adineta_vaga 21
Octopus_bimaculoides_280 8
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   8
Helobdella_robusta_ 6
Capitella_sp._I_ 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   5
Nasonia_vitripennis_   (Jewel wasp)   8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 7
Drosophila_willistoni_1.3 8
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 5
Drosophila_suzukii 6
Drosophila_yakuba_1.3 7
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 6
Drosophila_melanogaster_76_5   (Fruit fly)   7
Drosophila_erecta_1.3 7
Drosophila_ananassae_1.3 7
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 8
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   9
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8
Anopheles_darlingi_22   (American malaria mosquito)   6
Anopheles_gambiae_49_3j   (African malaria mosquito)   9
Tribolium_castaneum_3.0   (Red flour beetle)   8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9
Acyrthosiphon_pisum_   (Pea aphid)   7
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   8
Strigamia_maritima_22 6
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   6
Meloidogyne_hapla_ 5
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   10
Caenorhabditis_japonica_ 4
Caenorhabditis_brenneri_ 11
Caenorhabditis_remanei_ 7
Caenorhabditis_elegans_76_235   (Roundworm)   9
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 8
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   6
Schistosoma_mansoni_ 7
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   6
Hydra_vulgaris 5
Amphimedon_queenslandica 8
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 5
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 8
Conidiobolus_coronatus_NRRL28638_v1.0 6
Mortierella_verticillata_NRRL_6337_ 7
Phycomyces_blakesleeanus_ 6
Rhizopus_oryzae_RA_99-880_ 6
Mucor_circinelloides_ 5
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 10
Sporisorium_reilianum_22 7
Ustilago_maydis_ 7
Mixia_osmundae_IAM_14324_v1.0 7
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7
Melampsora_laricis-populina_ 5
Rhodotorula_graminis_WP1_v1.0 6
Sporobolomyces_roseus_IAM_13481_ 5
Microbotryum_violaceum_22 7
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 6
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 6
Coniophora_puteana 7
Hydnomerulius_pinastri_v2.0 7
Paxillus_rubicundulus_Ve08.2h10_v1.0 7
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 7
Scleroderma_citrinum_Foug_A_v1.0 7
Coprinopsis_cinerea_okayama7_130_v3 7
Pleurotus_ostreatus_   (Oyster mushroom)   6
Amanita_thiersii_Skay4041_v1.0 7
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6
Galerina_marginata_v1.0 7
Hebeloma_cylindrosporum_h7_v2.0 6
Laccaria_bicolor_S238N-H82_ 7
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 6
Stereum_hirsutum_FP-91666_SS1__v1.0 7
Heterobasidion_annosum_ 7
Gloeophyllum_trabeumv1.0 7
Punctularia_strigosozonata_v1.0 6
Sebacina_vermifera_MAFF_305830_v1.0 7
Fomitiporia_mediterranea_v1.0 6
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 8
Wolfiporia_cocos_MD-104_SS10__v1.0 7
Fomitopsis_pinicolav1.0 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 7
Phanerochaete_chrysosporium_RP-78_2.1 7
Dichomitus_squalens 6
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   7
Daldinia_eschscholzii_EC12_v1.0 7
Apiospora_montagnei_NRRL_25634_v1.0 6
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 7
Podospora_anserina_ 7
Sporotrichum_thermophile_ATCC_42464_ 7
Thielavia_terrestris_NRRL_8126_ 6
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 6
Neurospora_discreta_FGSC_8579_ 6
Neurospora_crassa_OR74A_ 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   6
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 6
Acremonium_alcalophilumv_1.0 6
Glomerella_graminicola_22 7
Fusarium_graminearum_ 7
Nectria_haematococca_mpVI_ 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 7
Trichoderma_asperellum_CBS_433.97_v1.0 7
Trichoderma_atroviride_ 6
Trichoderma_citrinoviride_v1.0 7
Trichoderma_reesei_1.2 6
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   6
Botrytis_cinerea_B05.10_ 6
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 7
Didymella_exigua_CBS_183.55_v1.0 5
Leptosphaeria_maculans_22 7
Setosphaeria_turcica_v1.0 6
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6
Cochliobolus_victoriae_FI3_v1.0 6
Cochliobolus_carbonum_26-R-13_v1.0 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   6
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 6
Pyrenophora_teres_f._teres_22 7
Pyrenophora_tritici-repentis_ 7
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 6
Zasmidium_cellare_ATCC_36951_v1.0 6
Dothistroma_septosporum 6
Septoria_musiva_v1.0 6
Mycosphaerella_fijiensis_CIRAD86_ 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6
Paracoccidioides_brasiliensis_Pb18_ 5
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 7
Ajellomyces_dermatitidis_SLH14081_ 7
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 7
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 7
Trichophyton_rubrum_CBS_118892_ 7
Uncinocarpus_reesii_1704_ 6
Aspergillus_zonatus_v1.0 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 7
Penicillium_chrysogenum_v1.0 6
Aspergillus_acidus_v1.0 5
Aspergillus_fumigatus_Af293 6
Aspergillus_brasiliensis_v1.0 6
Aspergillus_nidulans_FGSC_A4_ 7
Aspergillus_sydowii_v1.0 7
Aspergillus_versicolor_v1.0 7
Aspergillus_glaucus 6
Aspergillus_carbonarius_ITEM_5010_ 6
Neosartorya_fischeri_NRRL_181_ 7
Aspergillus_terreus_NIH2624_ 7
Aspergillus_tubingensis_v1.0 5
Aspergillus_wentii_v1.0 7
Aspergillus_oryzae_RIB40_ 7
Aspergillus_niger_22 7
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 7
Penicillium_marneffei_ATCC_18224_ 7
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 6
Pichia_membranifaciensv1.0 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 6
Candida_dubliniensis_CD36_ 7
Candida_tropicalis_MYA-3404_ 7
Candida_parapsilosis_ 6
Candida_albicans_SC5314 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 7
Pichia_stipitis_CBS_6054_ 6
Candida_guilliermondii_ATCC_6260_ 6
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 7
Wickerhamomyces_anomalus 7
Pichia_pastoris_GS115_ 6
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4
Yarrowia_lipolytica_CLIB122 6
Candida_lusitaniae_ATCC_42720_ 7
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 6
Vanderwaltozyma_polyspora_DSM_70294_ 6
Candida_glabrata_CBS138 7
Kluyveromyces_thermotolerans_CBS_6340 7
Lachancea_kluyveri_ 7
Kluyveromyces_waltii 7
Ashbya_gossypii_ATCC_10895_ 7
Zygosaccharomyces_rouxii_ 7
Saccharomyces_mikatae_MIT 6
Saccharomyces_paradoxus_MIT 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   7
Saccharomyces_bayanus_MIT 5
Kluyveromyces_lactis 7
Schizosaccharomyces_cryophilus_OY26_22 6
Schizosaccharomyces_octosporus_yFS286_ 6
Schizosaccharomyces_japonicus_yFS275_ 6
Schizosaccharomyces_pombe   (Fission yeast)   6
Catenaria_anguillulae_PL171_v1.0 6
Allomyces_macrogynus_ATCC_38327_ 10
Spizellomyces_punctatus_DAOM_BR117_ 9
Dictyostelium_discoideum 9
Dictyostelium_purpureum_ 8
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 14
Pinus_taeda   (Loblolly pine)   5
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   8
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 22
Citrus_clementina_v165 9
Citrus_sinensis_v154   (Sweet orange)   8
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12
Capsella_rubella_v183 9
Arabidopsis_lyrata_   (Lyrate rockcress)   8
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   12
Phaseolus_vulgaris_v186   (French bean)   10
Glycine_max_v109   (Soybean)   15
Cucumis_sativus_v122   (Cucumber)   11
Fragaria_vesca_   (Wild strawberry)   7
Malus_domestica_v196   (Apple)   7
Prunus_persica_v139   (Peach)   7
Linum_usitatissimum_v200   (Flax)   11
Manihot_esculenta_v147   (Cassava)   8
Populus_trichocarpa_v156   (Black cottonwood)   11
Vitis_vinifera_   (Wine grape)   8
Mimulus_guttatus_v140   (Spotted monkey flower)   8
Solanum_lycopersicum_v.2.3   (Tomato)   9
Solanum_tuberosum_   (Potato)   9
Actinidia_chinensis_Hongyang_ 4
Aquilegia_coerulea_v195 15
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   10
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   11
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 10
Oryza_glumaepatula_22 7
Oryza_glaberrima   (African rice)   9
Oryza_punctata_22 14
Oryza_nivara_22 7
Oryza_brachyantha_22   (Malo sina)   9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10
Oryza_sativa_v193   (Rice)   10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   14
Setaria_italica_v164   (Foxtail millet)   9
Zea_mays_subsp._mays_   (Maize)   14
Zea_mays_v181   (Maize)   14
Sorghum_bicolor_   (Sorghum)   9
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   9
Amborella_trichopoda_22 7
Physcomitrella_patens 6
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 7
Volvox_carteri_v199 8
Chlamydomonas_reinhardtii_4.0 4
Ostreococcus_sp._RCC809_ 5
Ostreococcus_lucimarinus_CCE9901_ 7
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 9
Micromonas_sp._RCC299_ 7
Micromonas_pusilla_CCMP1545_v3.0 9
Cyanidioschyzon_merolae_strain_10D_22 8
Cyanidioschyzon_merolae 8
Porphyridium_purpureum_02_2012 9
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 5
Giardia_lamblia_2.3 6
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 8
Leishmania_major_strain_Friedlin_ 8
Leishmania_infantum_JPCM5_2.4 8
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 8
Trypanosoma_vivax_ 7
Trypanosoma_cruzi_strain_CL_Brener 6
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 8
Trypanosoma_brucei_TREU927_v4.1 8
Ectocarpus_siliculosus 8
Aureococcus_anophagefferens_ 7
Albugo_laibachii_22 8
Pythium_iwayamai_DAOM_BR242034_22 6
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 8
Pythium_aphanidermatum_DAOM_BR444_22 7
Pythium_irregulare_DAOM_BR486_22 8
Pythium_vexans_DAOM_BR484_22 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7
Phytophthora_sojae_1.1 7
Phytophthora_infestans_T30-4_ 8
Phytophthora_capsici_ 6
Hyaloperonospora_arabidopsidis_22 6
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 4
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 10
Paramecium_tetraurelia_ 11
Tetrahymena_thermophila_SB210_1_ 9
Ichthyophthirius_multifiliis_strain_G5_ 5
Cryptosporidium_hominis 5
Cryptosporidium_muris 6
Cryptosporidium_parvum_Iowa_II 6
Neospora_caninum 6
Toxoplasma_gondii_VEG 3
Toxoplasma_gondii_ME49 7
Toxoplasma_gondii_GT1 5
Babesia_bovis_T2Bo_ 14
Theileria_parva__ 5
Theileria_annulata 7
Plasmodium_falciparum_3D7_ 9
Plasmodium_vivax_SaI-1_7.0 8
Plasmodium_knowlesi_strain_H_ 6
Plasmodium_yoelii_ssp._yoelii_1_ 7
Plasmodium_chabaudi_ 9
Plasmodium_berghei_ANKA_ 9
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 6
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 2
Deinococcus_maricopensis_DSM_21211 1
Marinithermus_hydrothermalis_DSM_14884 1
Sinorhizobium_fredii_NGR234 1
Candidatus_Caldiarchaeum_subterraneum 1
Cenarchaeum_symbiosum_A 1
Candidatus_Nitrosopumilus_sp._AR2 1
Nitrosopumilus_maritimus_SCM1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Acidilobus_saccharovorans_345-15 1
Fervidicoccus_fontis_Kam940 1
Pyrolobus_fumarii_1A 1
Hyperthermus_butylicus_DSM_5456 1
Thermogladius_cellulolyticus_1633 1
Ignisphaera_aggregans_DSM_17230 1
Aeropyrum_pernix_K1 1
Ignicoccus_hospitalis_KIN4/I 1
Thermosphaera_aggregans_DSM_11486 1
Desulfurococcus_fermentans_DSM_16532 1
Desulfurococcus_kamchatkensis_1221n 1
Desulfurococcus_mucosus_DSM_2162 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Caldivirga_maquilingensis_IC-167 1
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Thermoproteus_uzoniensis_768-20 1
Thermoproteus_tenax_Kra_1 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 2
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanoregula_boonei_6A8 1
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 1
Thermococcus_kodakarensis_KOD1 1
Thermoplasmatales_archaeon_BRNA1 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Picrophilus_torridus_DSM_9790 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 2
Haloterrigena_turkmenica_DSM_5511 1
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 2
Haloferax_volcanii_DS2 1
Haloarcula_marismortui_ATCC_43049 2
Halalkalicoccus_jeotgali_B3 1
Methanotorris_igneus_Kol_5 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
methanocaldococcus_infernus_ME 1
Methanocaldococcus_jannaschii_DSM_2661 2
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Aciduliprofundum_sp._MAR08-339 1
Aciduliprofundum_boonei_T469 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   35
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7
Cryptococcus_neoformans_var._grubii_H99_ 7
Cryptococcus_neoformans_B-3501A_ 7
Cryptococcus_neoformans_JEC21_ 7
Paracoccidioides_brasiliensis_Pb01_ 6
Paracoccidioides_brasiliensis_Pb03_ 6
Coccidioides_posadasii_str._Silveira_ 7
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 5
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 7
Histoplasma_capsulatum_H143 6
Histoplasma_capsulatum_H88 7
Histoplasma_capsulatum_G186AR 7
Aspergillus_fumigatus_A1163_ 6
Candida_albicans_WO-1_ 6
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 7
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 6
Saccharomyces_cerevisiae_T7 7
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 5
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 2
Saccharomyces_cerevisiae_Sigma1278b 7
Saccharomyces_cerevisiae_W303 7
Saccharomyces_cerevisiae_JAY291 7
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_CLIB215 4
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 7
Saccharomyces_cerevisiae_YJM789 7
Saccharomyces_cerevisiae_RM11-1a 7
Saccharomyces_cerevisiae_RM11-1a_ 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7
Schizosaccharomyces_pombe_972h-_ 6
Batrachochytrium_dendrobatidis_JEL423_ 8
Batrachochytrium_dendrobatidis_JAM81_ 8
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   9
Hordeum_vulgare_22   (Domesticated barley)   20
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8
Trypanosoma_brucei_Lister_427_v4.1 8
Neospora_caninum_Nc-Liverpool_6.2 6
Plasmodium_falciparum_HB3_ 9
Plasmodium_falciparum_Dd2_ 7
Deinococcus_peraridilitoris_DSM_19664 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Caldisphaera_lagunensis_DSM_15908 1
Aeropyrum_camini_SY1_=_JCM_12091 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Methanomethylovorans_hollandica_DSM_15978 2
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Archaeoglobus_sulfaticallidus_PM70-1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1
Ferroplasma_acidarmanus_fer1 1
Halovivax_ruber_XH-70 1
Natronobacterium_gregoryi_SP2 1
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_C6 1
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   8
Gorilla_gorilla_69_3.1   (Western gorilla)   8
Pongo_abelii_69_2   (Sumatran orangutan)   8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6
Macaca_mulatta_69_1   (Rhesus monkey)   8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_69_3   (Small-eared galago)   8
Microcebus_murinus_69_1   (Gray mouse lemur)   5
Rattus_norvegicus_69_3.4   (Norway rat)   9
Mus_musculus_69_38   (House mouse)   9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6
Cavia_porcellus_69_3   (Domestic guinea pig)   9
Oryctolagus_cuniculus_69_2   (Rabbit)   8
Ochotona_princeps_69   (American pika)   5
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9
Ailuropoda_melanoleuca_69_1   (Giant panda)   9
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   3
Equus_caballus_69_2   (Horse)   8
Myotis_lucifugus_69_2.0   (Little brown bat)   9
Pteropus_vampyrus_69_1   (Large flying fox)   5
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   6
Loxodonta_africana_69_3   (African savanna elephant)   10
Echinops_telfairi_69   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12
Latimeria_chalumnae_69_1   (Coelacanth)   7
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   10
Oryzias_latipes_69_1   (Japanese medaka)   9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9
Danio_rerio_69_9   (Zebrafish)   12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   7
Drosophila_melanogaster_69_5   (Fruit fly)   7
Caenorhabditis_elegans_69_215   (Roundworm)   7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7
Arabidopsis_thaliana_10   (Thale cress)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   15
Homo_sapiens__(NCBI_version)   (Human)   11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Encephalitozoon_intestinalis__(endoparasite) 3
Encephalitozoon_cuniculi_(endoparasite) 2
Lotus_japonicus__(Early_assembly) 3
Malus_x_domestica_(Duplicate)   (Apple)   7
Ricinus_communis__(Early_assembly)   (Castor bean)   8
Nicotiana_benthamiana_0.4.4_(Early_draft) 15
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 3
UniProt__viral_sequences_(Viral) 1
Protozoadb_2010_08_(Protozoadb) 191
STRING_v9.0.5_(STRING) 870
NCBI_2017_08_genome 7313
Core_Eukaryotic_Genes_458_(CEGMA) 10
Uniprot_2018_03_genome 145353
Protein_Data_Bank_(all_PDB_sequenc) 15
NCBI_viral_sequences_(Viral) 2
TargetDB__(Targets) 52

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