SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50729 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   61
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_76_3.1   (Western gorilla)   9
Pongo_abelii_76_2   (Sumatran orangutan)   12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10
Papio_anubis_76   (Olive baboon)   11
Macaca_mulatta_76_1   (Rhesus monkey)   26
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   20
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   8
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   34
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7
Cavia_porcellus_76_3   (Domestic guinea pig)   9
Oryctolagus_cuniculus_76_2   (Rabbit)   11
Ochotona_princeps_76   (American pika)   10
Tupaia_belangeri_76   (Northern tree shrew)   10
Sus_scrofa_76_10.2   (Pig)   10
Bos_taurus_76_3.1   (Cattle)   9
Ovis_aries_76_3.1   (Sheep)   12
Vicugna_pacos_76_1   (Alpaca)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_76_1   (Giant panda)   9
Canis_familiaris_76_3.1   (Dog)   7
Felis_catus_76_6.2   (Domestic cat)   7
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   6
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   9
Procavia_capensis_76_1   (Cape rock hyrax)   8
Loxodonta_africana_76_3   (African savanna elephant)   10
Echinops_telfairi_76   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   14
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_76_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_76_5   (Platypus)   12
Saccoglossus_kowalevskii_v3.0 9
Petromyzon_marinus_76_7.0   (Sea lamprey)   7
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   14
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10
Latimeria_chalumnae_76_1   (Coelacanth)   11
Lepisosteus_oculatus_76   (Spotted gar)   12
Gadus_morhua_76_1   (Atlantic cod)   9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   11
Takifugu_rubripes_76_4   (Torafugu)   27
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   14
Oryzias_latipes_76_1   (Japanese medaka)   15
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   11
Danio_rerio_76_9   (Zebrafish)   20
Oikopleura_dioica 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14
Adineta_vaga 11
Octopus_bimaculoides_280 8
Crassostrea_gigas_22   (Pacific oyster)   5
Lottia_gigantea_   (Owl limpet)   7
Helobdella_robusta_ 8
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   9
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   8
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   4
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 6
Drosophila_suzukii 3
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 7
Drosophila_melanogaster_76_5   (Fruit fly)   11
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   13
Anopheles_darlingi_22   (American malaria mosquito)   7
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   4
Strigamia_maritima_22 4
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8
Pristionchus_pacificus_ 11
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 3
Onchocerca_volvulus_22 9
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 9
Caenorhabditis_remanei_ 7
Caenorhabditis_elegans_76_235   (Roundworm)   6
Caenorhabditis_briggsae_2 6
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 3
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   5
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 11
Amphimedon_queenslandica 8
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 8
Monosiga_brevicollis_ 7
Sphaeroforma_arctica_JP610_ 9
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 4
Phycomyces_blakesleeanus_ 7
Rhizopus_oryzae_RA_99-880_ 7
Mucor_circinelloides_ 6
Rhizomucor_miehei_CAU432_ 4
Malassezia_globosa_CBS_7966_ 8
Sporisorium_reilianum_22 2
Ustilago_maydis_ 3
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 4
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 4
Hydnomerulius_pinastri_v2.0 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 6
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 4
Scleroderma_citrinum_Foug_A_v1.0 6
Coprinopsis_cinerea_okayama7_130_v3 4
Pleurotus_ostreatus_   (Oyster mushroom)   5
Amanita_thiersii_Skay4041_v1.0 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 4
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 2
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 3
Sebacina_vermifera_MAFF_305830_v1.0 15
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 6
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 3
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 3
Magnaporthe_grisea_70-15_ 3
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 4
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   3
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 3
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 4
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 4
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 5
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 3
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 3
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 5
Dekkera_bruxellensis_CBS_2499_v2.0 7
Pichia_membranifaciensv1.0 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 4
Candida_albicans_SC5314 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5
Pichia_stipitis_CBS_6054_ 4
Candida_guilliermondii_ATCC_6260_ 6
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 5
Wickerhamomyces_anomalus 6
Pichia_pastoris_GS115_ 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 5
Yarrowia_lipolytica_CLIB122 5
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 5
Lachancea_kluyveri_ 5
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 5
Zygosaccharomyces_rouxii_ 6
Saccharomyces_mikatae_MIT 6
Saccharomyces_paradoxus_MIT 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   5
Saccharomyces_bayanus_MIT 5
Kluyveromyces_lactis 4
Schizosaccharomyces_cryophilus_OY26_22 5
Schizosaccharomyces_octosporus_yFS286_ 5
Schizosaccharomyces_japonicus_yFS275_ 5
Schizosaccharomyces_pombe   (Fission yeast)   6
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 9
Spizellomyces_punctatus_DAOM_BR117_ 5
Dictyostelium_discoideum 6
Dictyostelium_purpureum_ 8
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 2
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   8
Theobroma_cacao_B97-61/B2_v1   (Cacao)   5
Gossypium_raimondii_v221 30
Citrus_clementina_v165 9
Citrus_sinensis_v154   (Sweet orange)   16
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   5
Arabidopsis_thaliana_10   (Thale cress)   6
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   10
Phaseolus_vulgaris_v186   (French bean)   6
Glycine_max_v109   (Soybean)   18
Cucumis_sativus_v122   (Cucumber)   7
Fragaria_vesca_   (Wild strawberry)   4
Malus_domestica_v196   (Apple)   8
Prunus_persica_v139   (Peach)   3
Linum_usitatissimum_v200   (Flax)   6
Manihot_esculenta_v147   (Cassava)   7
Populus_trichocarpa_v156   (Black cottonwood)   8
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   5
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   9
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 13
Triticum_urartu_22 7
Triticum_aestivum_22   (Bread wheat)   16
Aegilops_tauschii_22 7
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   5
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 6
Oryza_glaberrima   (African rice)   6
Oryza_punctata_22 4
Oryza_nivara_22 8
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   17
Setaria_italica_v164   (Foxtail millet)   7
Zea_mays_subsp._mays_   (Maize)   16
Zea_mays_v181   (Maize)   16
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   6
Amborella_trichopoda_22 4
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 4
Thecamonas_trahens_ATCC_50062_ 3
Bigelowiella_natans_CCMP2755_22 12
Giardia_lamblia_2.3 2
Cyanophora_paradoxa_ 4
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 2
Trypanosoma_cruzi_strain_CL_Brener 4
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 3
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 5
Aureococcus_anophagefferens_ 2
Albugo_laibachii_22 16
Pythium_iwayamai_DAOM_BR242034_22 11
Pythium_arrhenomanes_ATCC_12531_22 7
Pythium_ultimum_v1.7-2 6
Pythium_aphanidermatum_DAOM_BR444_22 8
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7
Phytophthora_sojae_1.1 10
Phytophthora_infestans_T30-4_ 10
Phytophthora_capsici_ 9
Hyaloperonospora_arabidopsidis_22 9
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 2
Paramecium_tetraurelia_ 5
Tetrahymena_thermophila_SB210_1_ 5
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 4
Cryptosporidium_muris 5
Cryptosporidium_parvum_Iowa_II 4
Neospora_caninum 2
Toxoplasma_gondii_VEG 3
Toxoplasma_gondii_ME49 3
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 4
Theileria_parva__ 3
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 2
Plasmodium_berghei_ANKA_ 2
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 7
Trichomonas_vaginalis_ 8
Guillardia_theta_CCMP2712_v1.0_ 13
Emiliania_huxleyi_CCMP1516_ 10
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Clostridium_lentocellum_DSM_5427 1
Clostridium_tetani_E88 1
Clostridium_cellulovorans_743B 1
Aerococcus_urinae_ACS-120-V-Col10a 1
Streptococcus_oralis_Uo5 1
Lysinibacillus_sphaericus_C3-41 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1
Halobacillus_halophilus_DSM_2266 1
Flexibacter_litoralis_DSM_6794 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Pseudomonas_mendocina_ymp 1
Methanobrevibacter_smithii_ATCC_35061 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   13
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   11
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 4
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 5
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB382 2
Saccharomyces_cerevisiae_CLIB324 3
Saccharomyces_cerevisiae_CBS7960 5
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 5
Saccharomyces_cerevisiae_FostersB 6
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 4
Saccharomyces_cerevisiae_LalvinQA23 4
Saccharomyces_cerevisiae_AWRI796 4
Saccharomyces_cerevisiae_Sigma1278b 5
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 5
Saccharomyces_cerevisiae_AWRI1631 5
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 3
Saccharomyces_cerevisiae_CLIB215 5
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 5
Saccharomyces_cerevisiae_YJM789 5
Saccharomyces_cerevisiae_RM11-1a 5
Saccharomyces_cerevisiae_RM11-1a_ 5
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5
Schizosaccharomyces_pombe_972h-_ 6
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 4
Chamaesiphon_minutus_PCC_6605 1
Stanieria_cyanosphaera_PCC_7437 1
Saccharothrix_espanaensis_DSM_44229 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1
Streptococcus_suis_GZ1 1
Streptococcus_suis_98HAH33 1
Streptococcus_suis_05ZYH33 1
Neisseria_meningitidis_WUE_2594 1
Neisseria_gonorrhoeae_FA_1090 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   7
Pongo_abelii_69_2   (Sumatran orangutan)   8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8
Macaca_mulatta_69_1   (Rhesus monkey)   11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   8
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   9
Oryctolagus_cuniculus_69_2   (Rabbit)   11
Ochotona_princeps_69   (American pika)   10
Tupaia_belangeri_69   (Northern tree shrew)   10
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_69_1   (Giant panda)   9
Canis_familiaris_69_3.1   (Dog)   7
Felis_catus_69   (Domestic cat)   7
Equus_caballus_69_2   (Horse)   5
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   6
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   9
Procavia_capensis_69_1   (Cape rock hyrax)   8
Loxodonta_africana_69_3   (African savanna elephant)   7
Echinops_telfairi_69   (Small Madagascar hedgehog)   10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7
Macropus_eugenii_69_1.0   (Tammar wallaby)   6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7
Ornithorhynchus_anatinus_69_5   (Platypus)   11
Petromyzon_marinus_69_7.0   (Sea lamprey)   6
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   11
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   11
Takifugu_rubripes_69_4   (Torafugu)   11
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   4
Caenorhabditis_elegans_69_215   (Roundworm)   5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5
Arabidopsis_thaliana_10   (Thale cress)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   69
Homo_sapiens__(NCBI_version)   (Human)   13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Encephalitozoon_intestinalis__(endoparasite) 5
Encephalitozoon_cuniculi_(endoparasite) 5
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 7
Malus_x_domestica_(Duplicate)   (Apple)   8
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 12
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
TargetDB__(Targets) 26
PDB_chains_(SCOP_1.75)_(PDB) 3
Protein_Data_Bank_(all_PDB_sequenc) 6
Protozoadb_2010_08_(Protozoadb) 108
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 26
STRING_v9.0.5_(STRING) 630
Uniprot_2018_03_genome 25365
NCBI_2017_08_genome 8495

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