SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50729,_gap_,48350,54236,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
48350 - GTPase activation domain, GAP
54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Sorex_araneus_76_1   (European shrew)   0
Drosophila_yakuba_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_mojavensis_1.3 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2

Longest transcript per gene
Genome     Number
Sorex_araneus_69_1   (European shrew)   0
Drosophila_melanogaster_69_5   (Fruit fly)   1

Others
Genome     Number
Uniprot_2018_03_genome 304
NCBI_2017_08_genome 39
STRING_v9.0.5_(STRING) 3

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