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Domain combinations for _gap_,50978,48452 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like
48452 - TPR-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_mojavensis_1.3 1
Acyrthosiphon_pisum_   (Pea aphid)   1
Daphnia_pulex_   (Common water flea)   0
Sarcoptes_scabiei 1
Caenorhabditis_brenneri_ 0
Trichoplax_adhaerens_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 2
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Aquilegia_coerulea_v195 0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Setaria_italica_v164   (Foxtail millet)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Bigelowiella_natans_CCMP2755_22 1
Perkinsus_marinus_ATCC_50983_ 1
Neospora_caninum 0
Babesia_bovis_T2Bo_ 0
Plasmodium_falciparum_3D7_ 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0

Longest transcript per gene
Genome     Number
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 462
NCBI_2017_08_genome 177
TargetDB__(Targets) 1
Protozoadb_2010_08_(Protozoadb) 0

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