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Domain combinations for _gap_,50978,50998,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like
50998 - Quinoprotein alcohol dehydrogenase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   2
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 1
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2
Poecilia_formosa_76   (Amazon molly)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 2
Octopus_bimaculoides_280 2
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Linepithema_humile_v1.1   (Argentine ant)   1
Drosophila_willistoni_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_virilis_1.2 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Daphnia_pulex_   (Common water flea)   1
Pristionchus_pacificus_ 2
Onchocerca_volvulus_22 1
Caenorhabditis_elegans_76_235   (Roundworm)   2
Echinococcus_multilocularis_ 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 1
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Sphaerobolus_stellatus_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Pisolithus_tinctorius_Marx_270_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 1
Heterobasidion_annosum_ 0
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 2
Neurospora_crassa_OR74A_ 1
Glomerella_graminicola_22 1
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_reesei_1.2 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 1
Pyrenophora_tritici-repentis_ 1
Mycosphaerella_graminicola_IPO323_ 1
Septoria_musiva_v1.0 1
Microsporum_canis_CBS_113480_ 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_oryzae_RIB40_ 2
Aspergillus_flavus_NRRL3357_ 1
Penicillium_marneffei_ATCC_18224_ 1
Candida_tropicalis_MYA-3404_ 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 1
Candida_glabrata_CBS138 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Allomyces_macrogynus_ATCC_38327_ 2
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2
Eucalyptus_grandis_v201   (Rose gum)   1
Gossypium_raimondii_v221 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   1
Vitis_vinifera_   (Wine grape)   2
Solanum_lycopersicum_v.2.3   (Tomato)   0
Aquilegia_coerulea_v195 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Sorghum_bicolor_   (Sorghum)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 3
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_brucei_gambiense_v4.1 1
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_infestans_T30-4_ 0
Hyaloperonospora_arabidopsidis_22 1
Thalassiosira_pseudonana_CCMP1335 0
Paramecium_tetraurelia_ 2
Tetrahymena_thermophila_SB210_1_ 1
Babesia_bovis_T2Bo_ 2
Theileria_annulata 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Isosphaera_pallida_ATCC_43644 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Ajellomyces_dermatitidis_ER-3_ 1
Saccharomyces_cerevisiae_FostersB 1
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Trypanosoma_brucei_Lister_427_v4.1 2
Singulisphaera_acidiphila_DSM_18658 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   2
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Meleagris_gallopavo_69_2   (Turkey)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   3
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Malus_x_domestica_(Duplicate)   (Apple)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Protein_Data_Bank_(all_PDB_sequenc) 4
Protozoadb_2010_08_(Protozoadb) 10
STRING_v9.0.5_(STRING) 50
Uniprot_2018_03_genome 7038
NCBI_2017_08_genome 918
TargetDB__(Targets) 0

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