SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50978,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   95
Pan_troglodytes_76_2.1.4   (Chimpanzee)   36
Gorilla_gorilla_76_3.1   (Western gorilla)   45
Pongo_abelii_76_2   (Sumatran orangutan)   40
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   33
Papio_anubis_76   (Olive baboon)   42
Macaca_mulatta_76_1   (Rhesus monkey)   54
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   65
Otolemur_garnettii_76_3   (Small-eared galago)   31
Microcebus_murinus_76_1   (Gray mouse lemur)   32
Rattus_norvegicus_76_5.0   (Norway rat)   39
Mus_musculus_76_38   (House mouse)   69
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   32
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   24
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   34
Cavia_porcellus_76_3   (Domestic guinea pig)   26
Oryctolagus_cuniculus_76_2   (Rabbit)   35
Ochotona_princeps_76   (American pika)   29
Tupaia_belangeri_76   (Northern tree shrew)   33
Sus_scrofa_76_10.2   (Pig)   30
Bos_taurus_76_3.1   (Cattle)   33
Ovis_aries_76_3.1   (Sheep)   32
Vicugna_pacos_76_1   (Alpaca)   24
Tursiops_truncatus_76_1   (Bottlenose dolphin)   33
Mustela_putorius_furo_76_1.0   (Domestic ferret)   32
Ailuropoda_melanoleuca_76_1   (Giant panda)   29
Canis_familiaris_76_3.1   (Dog)   47
Felis_catus_76_6.2   (Domestic cat)   29
Equus_caballus_76_2   (Horse)   33
Myotis_lucifugus_76_2.0   (Little brown bat)   31
Pteropus_vampyrus_76_1   (Large flying fox)   35
Sorex_araneus_76_1   (European shrew)   22
Erinaceus_europaeus_76   (Western European hedgehog)   30
Procavia_capensis_76_1   (Cape rock hyrax)   39
Loxodonta_africana_76_3   (African savanna elephant)   40
Echinops_telfairi_76   (Small Madagascar hedgehog)   31
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   39
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   27
Macropus_eugenii_76_1.0   (Tammar wallaby)   33
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   42
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   36
Ornithorhynchus_anatinus_76_5   (Platypus)   18
Saccoglossus_kowalevskii_v3.0 39
Petromyzon_marinus_76_7.0   (Sea lamprey)   8
Meleagris_gallopavo_76_2   (Turkey)   26
Gallus_gallus_76_4   (Chicken)   25
Anas_platyrhynchos_76_1.0   (Mallard)   24
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   32
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   31
Anolis_carolinensis_76_2.0   (Green anole)   31
Xenopus_laevis_   (African clawed frog)   54
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   36
Latimeria_chalumnae_76_1   (Coelacanth)   42
Lepisosteus_oculatus_76   (Spotted gar)   43
Gadus_morhua_76_1   (Atlantic cod)   27
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   35
Takifugu_rubripes_76_4   (Torafugu)   77
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   34
Oryzias_latipes_76_1   (Japanese medaka)   31
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   31
Poecilia_formosa_76   (Amazon molly)   40
Oreochromis_niloticus_76_1.0   (Nile tilapia)   44
Astyanax_mexicanus_76   (Mexican tetra)   28
Danio_rerio_76_9   (Zebrafish)   49
Oikopleura_dioica 19
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   26
Ciona_intestinalis_76   (Vase tunicate)   15
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   34
Adineta_vaga 53
Octopus_bimaculoides_280 31
Crassostrea_gigas_22   (Pacific oyster)   21
Lottia_gigantea_   (Owl limpet)   17
Helobdella_robusta_ 24
Capitella_sp._I_ 34
Danaus_plexippus_OGS1.0   (Monarch butterfly)   27
Heliconius_melpomene_   (Postman butterfly)   21
Bombyx_mori_   (Domestic silkworm)   15
Nasonia_vitripennis_   (Jewel wasp)   22
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   27
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   28
Linepithema_humile_v1.1   (Argentine ant)   26
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   18
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   25
Atta_cephalotes_v1.1 25
Camponotus_floridanus_v3.3   (Florida carpenter ant)   21
Lucilia_cuprina   (Australian sheep blowfly)   21
Drosophila_grimshawi_1.3 29
Drosophila_willistoni_1.3 33
Drosophila_pseudoobscura_2.13 29
Drosophila_persimilis_1.3 29
Drosophila_suzukii 22
Drosophila_yakuba_1.3 27
Drosophila_simulans_1.3 24
Drosophila_sechellia_1.3 21
Drosophila_melanogaster_76_5   (Fruit fly)   41
Drosophila_erecta_1.3 27
Drosophila_ananassae_1.3 25
Drosophila_virilis_1.2 25
Drosophila_mojavensis_1.3 27
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   30
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   31
Anopheles_darlingi_22   (American malaria mosquito)   14
Anopheles_gambiae_49_3j   (African malaria mosquito)   20
Tribolium_castaneum_3.0   (Red flour beetle)   16
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   31
Acyrthosiphon_pisum_   (Pea aphid)   14
Rhodnius_prolixus_22 15
Daphnia_pulex_   (Common water flea)   18
Strigamia_maritima_22 28
Sarcoptes_scabiei 14
Tetranychus_urticae_   (Two-spotted spider mite)   22
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   9
Pristionchus_pacificus_ 10
Meloidogyne_incognita_   (Southern root-knot nematode)   17
Meloidogyne_hapla_ 20
Onchocerca_volvulus_22 23
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   29
Caenorhabditis_japonica_ 11
Caenorhabditis_brenneri_ 27
Caenorhabditis_remanei_ 28
Caenorhabditis_elegans_76_235   (Roundworm)   33
Caenorhabditis_briggsae_2 17
Trichinella_spiralis_22 19
Hymenolepis_microstoma_ 25
Echinococcus_multilocularis_ 27
Echinococcus_granulosus_ 26
Taenia_solium_   (Pork tapeworm)   22
Schistosoma_mansoni_ 28
Mnemiopsis_leidyi   (Sea walnut)   26
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   16
Hydra_vulgaris 16
Amphimedon_queenslandica 29
Trichoplax_adhaerens_ 23
Proterospongia_sp._ATCC_50818_ 23
Monosiga_brevicollis_ 17
Sphaeroforma_arctica_JP610_ 12
Capsaspora_owczarzaki_ATCC_30864_ 29
Conidiobolus_coronatus_NRRL28638_v1.0 16
Mortierella_verticillata_NRRL_6337_ 28
Phycomyces_blakesleeanus_ 26
Rhizopus_oryzae_RA_99-880_ 12
Mucor_circinelloides_ 13
Rhizomucor_miehei_CAU432_ 25
Malassezia_globosa_CBS_7966_ 35
Sporisorium_reilianum_22 32
Ustilago_maydis_ 33
Mixia_osmundae_IAM_14324_v1.0 27
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 25
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 33
Melampsora_laricis-populina_ 20
Rhodotorula_graminis_WP1_v1.0 22
Sporobolomyces_roseus_IAM_13481_ 19
Microbotryum_violaceum_22 31
Wallemia_sebi_v1.0 15
Sphaerobolus_stellatus_v1.0 29
Piloderma_croceum_F_1598_v1.0 29
Serpula_lacrymans_var._lacrymans_S7.9_ 20
Coniophora_puteana 26
Hydnomerulius_pinastri_v2.0 33
Paxillus_rubicundulus_Ve08.2h10_v1.0 25
Pisolithus_microcarpus_441_v1.0 21
Pisolithus_tinctorius_Marx_270_v1.0 22
Scleroderma_citrinum_Foug_A_v1.0 26
Coprinopsis_cinerea_okayama7_130_v3 29
Pleurotus_ostreatus_   (Oyster mushroom)   22
Amanita_thiersii_Skay4041_v1.0 27
Amanita_muscaria_Koide_v1.0   (Fly agaric)   25
Galerina_marginata_v1.0 29
Hebeloma_cylindrosporum_h7_v2.0 29
Laccaria_bicolor_S238N-H82_ 18
Agaricus_bisporus_var._bisporus_ 21
Schizophyllum_commune_ 27
Stereum_hirsutum_FP-91666_SS1__v1.0 28
Heterobasidion_annosum_ 16
Gloeophyllum_trabeumv1.0 20
Punctularia_strigosozonata_v1.0 16
Sebacina_vermifera_MAFF_305830_v1.0 20
Fomitiporia_mediterranea_v1.0 21
Tulasnella_calospora_AL13/4D_v1.0 20
Postia_placenta_ 18
Wolfiporia_cocos_MD-104_SS10__v1.0 23
Fomitopsis_pinicolav1.0 17
Fomitopsis_pinicola_FP-58527_SS1_v3.0 15
Phanerochaete_chrysosporium_RP-78_2.1 14
Dichomitus_squalens 19
Trametes_versicolor_v1.0 22
Tremella_mesenterica_   (Witches' butter)   18
Daldinia_eschscholzii_EC12_v1.0 26
Apiospora_montagnei_NRRL_25634_v1.0 31
Magnaporthe_poae_ATCC_64411_22 23
Magnaporthe_grisea_70-15_ 30
Podospora_anserina_ 33
Sporotrichum_thermophile_ATCC_42464_ 31
Thielavia_terrestris_NRRL_8126_ 30
Chaetomium_globosum_CBS_148.51_ 33
Neurospora_tetrasperma_ 33
Neurospora_discreta_FGSC_8579_ 29
Neurospora_crassa_OR74A_ 31
Cryphonectria_parasitica_   (Chestnut blight fungus)   27
Verticillium_albo-atrum_VaMs.102_ 17
Verticillium_dahliae_VdLs.17_ 28
Acremonium_alcalophilumv_1.0 25
Glomerella_graminicola_22 26
Fusarium_graminearum_ 29
Nectria_haematococca_mpVI_ 31
Fusarium_oxysporum_f._sp._lycopersici_4286_ 29
Fusarium_verticillioides_7600_ 27
Trichoderma_asperellum_CBS_433.97_v1.0 25
Trichoderma_atroviride_ 24
Trichoderma_citrinoviride_v1.0 21
Trichoderma_reesei_1.2 27
Trichoderma_virens_Gv29-8_ 28
Trichoderma_longibrachiatum_ATCC_18648_v1.0 21
Trichoderma_harzianum_CBS_226.95_v1.0 24
Amorphotheca_resinae_v1.0   (Creosote fungus)   29
Botrytis_cinerea_B05.10_ 26
Sclerotinia_sclerotiorum_ 27
Blumeria_graminis_22 19
Didymella_exigua_CBS_183.55_v1.0 27
Leptosphaeria_maculans_22 33
Setosphaeria_turcica_v1.0 29
Cochliobolus_miyabeanus_ATCC_44560_v1.0 29
Cochliobolus_victoriae_FI3_v1.0 29
Cochliobolus_carbonum_26-R-13_v1.0 28
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   29
Alternaria_brassicicola_ 24
Cochliobolus_lunatus_m118_v2.0 34
Pyrenophora_teres_f._teres_22 31
Pyrenophora_tritici-repentis_ 27
Stagonospora_nodorum_ 31
Mycosphaerella_graminicola_IPO323_ 27
Zasmidium_cellare_ATCC_36951_v1.0 31
Dothistroma_septosporum 28
Septoria_musiva_v1.0 25
Mycosphaerella_fijiensis_CIRAD86_ 23
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 26
Paracoccidioides_brasiliensis_Pb18_ 29
Coccidioides_posadasii_RMSCC_3488_ 28
Coccidioides_immitis_RS_ 32
Ajellomyces_dermatitidis_SLH14081_ 34
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 37
Microsporum_canis_CBS_113480_ 40
Trichophyton_equinum_CBS_127.97_ 30
Trichophyton_verrucosum_HKI_0517_ 32
Arthroderma_benhamiae_CBS_112371_ 36
Trichophyton_tonsurans_CBS_112818_ 33
Trichophyton_rubrum_CBS_118892_ 33
Uncinocarpus_reesii_1704_ 29
Aspergillus_zonatus_v1.0 29
Penicillium_chrysogenum_Wisconsin_54-1255_ 24
Penicillium_chrysogenum_v1.0 24
Aspergillus_acidus_v1.0 29
Aspergillus_fumigatus_Af293 31
Aspergillus_brasiliensis_v1.0 27
Aspergillus_nidulans_FGSC_A4_ 27
Aspergillus_sydowii_v1.0 28
Aspergillus_versicolor_v1.0 24
Aspergillus_glaucus 27
Aspergillus_carbonarius_ITEM_5010_ 23
Neosartorya_fischeri_NRRL_181_ 28
Aspergillus_terreus_NIH2624_ 28
Aspergillus_tubingensis_v1.0 32
Aspergillus_wentii_v1.0 28
Aspergillus_oryzae_RIB40_ 29
Aspergillus_niger_22 24
Aspergillus_niger_ATCC_1015_ 19
Aspergillus_flavus_NRRL3357_ 25
Aspergillus_clavatus_NRRL_1_ 30
Penicillium_marneffei_ATCC_18224_ 36
Tuber_melanosporum_Mel28_22 20
Tuber_melanosporum_Vittad_   (Perigord truffle)   22
Hansenula_polymorpha_v2.0 19
Dekkera_bruxellensis_CBS_2499_v2.0 12
Pichia_membranifaciensv1.0 19
Candida_tanzawaensis_NRRL_Y-17324__v1.0 20
Candida_dubliniensis_CD36_ 30
Candida_tropicalis_MYA-3404_ 25
Candida_parapsilosis_ 22
Candida_albicans_SC5314 28
Lodderomyces_elongisporus_NRRL_YB-4239_ 27
Babjeviella_inositovora_NRRL_Y-12698_v1.0 21
Pichia_stipitis_CBS_6054_ 26
Candida_guilliermondii_ATCC_6260_ 13
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 25
Debaromyces_hansenii 27
Wickerhamomyces_anomalus 12
Pichia_pastoris_GS115_ 17
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 18
Yarrowia_lipolytica_CLIB122 23
Candida_lusitaniae_ATCC_42720_ 17
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 18
Vanderwaltozyma_polyspora_DSM_70294_ 13
Candida_glabrata_CBS138 23
Kluyveromyces_thermotolerans_CBS_6340 18
Lachancea_kluyveri_ 14
Kluyveromyces_waltii 18
Ashbya_gossypii_ATCC_10895_ 21
Zygosaccharomyces_rouxii_ 21
Saccharomyces_mikatae_MIT 17
Saccharomyces_paradoxus_MIT 20
Saccharomyces_cerevisiae_76   (Baker's yeast)   17
Saccharomyces_bayanus_MIT 16
Kluyveromyces_lactis 18
Schizosaccharomyces_cryophilus_OY26_22 14
Schizosaccharomyces_octosporus_yFS286_ 16
Schizosaccharomyces_japonicus_yFS275_ 18
Schizosaccharomyces_pombe   (Fission yeast)   15
Catenaria_anguillulae_PL171_v1.0 37
Allomyces_macrogynus_ATCC_38327_ 57
Spizellomyces_punctatus_DAOM_BR117_ 36
Dictyostelium_discoideum 29
Dictyostelium_purpureum_ 26
Entamoeba_dispar_1.2 5
Entamoeba_invadens_1.2 4
Entamoeba_histolytica_1 5
Selaginella_moellendorffii_ 32
Pinus_taeda   (Loblolly pine)   14
Picea_abies   (Norway spruce)   6
Eucalyptus_grandis_v201   (Rose gum)   49
Theobroma_cacao_B97-61/B2_v1   (Cacao)   33
Gossypium_raimondii_v221 123
Citrus_clementina_v165 49
Citrus_sinensis_v154   (Sweet orange)   62
Thellungiella_halophila_v173 42
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   49
Capsella_rubella_v183 47
Arabidopsis_lyrata_   (Lyrate rockcress)   40
Arabidopsis_thaliana_10   (Thale cress)   53
Carica_papaya_   (Papaya)   26
Medicago_truncatula_   (Barrel medic)   51
Phaseolus_vulgaris_v186   (French bean)   47
Glycine_max_v109   (Soybean)   71
Cucumis_sativus_v122   (Cucumber)   41
Fragaria_vesca_   (Wild strawberry)   41
Malus_domestica_v196   (Apple)   63
Prunus_persica_v139   (Peach)   29
Linum_usitatissimum_v200   (Flax)   60
Manihot_esculenta_v147   (Cassava)   41
Populus_trichocarpa_v156   (Black cottonwood)   55
Vitis_vinifera_   (Wine grape)   29
Mimulus_guttatus_v140   (Spotted monkey flower)   29
Solanum_lycopersicum_v.2.3   (Tomato)   37
Solanum_tuberosum_   (Potato)   28
Actinidia_chinensis_Hongyang_ 49
Aquilegia_coerulea_v195 61
Triticum_urartu_22 39
Triticum_aestivum_22   (Bread wheat)   69
Aegilops_tauschii_22 37
Brachypodium_distachyon_   (Stiff brome)   42
Oryza_barthii_22   (African wild rice)   38
Oryza_meridionalis_22 55
Oryza_glumaepatula_22 53
Oryza_glaberrima   (African rice)   23
Oryza_punctata_22 55
Oryza_nivara_22 73
Oryza_brachyantha_22   (Malo sina)   27
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   48
Oryza_sativa_v193   (Rice)   48
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   41
Panicum_virgatum_v202   (Switchgrass)   52
Setaria_italica_v164   (Foxtail millet)   48
Zea_mays_subsp._mays_   (Maize)   48
Zea_mays_v181   (Maize)   51
Sorghum_bicolor_   (Sorghum)   40
Musa_balbisiana   (Balbis banana)   53
Musa_acuminata_22   (Wild Malaysian banana)   48
Amborella_trichopoda_22 24
Physcomitrella_patens 42
Coccomyxa_subellipsoidea_sp._C-169_v2 10
Asterochloris_sp._Cgr/DA1pho_v1.0 11
Chlorella_variabilis_sp._NC64A_ 19
Chlorella_vulgaris_ 11
Volvox_carteri_f._nagariensis_ 32
Volvox_carteri_v199 33
Chlamydomonas_reinhardtii_4.0 28
Ostreococcus_sp._RCC809_ 14
Ostreococcus_lucimarinus_CCE9901_ 14
Ostreococcus_tauri_ 14
Bathycoccus_prasinos_ 36
Micromonas_sp._RCC299_ 21
Micromonas_pusilla_CCMP1545_v3.0 28
Cyanidioschyzon_merolae_strain_10D_22 27
Cyanidioschyzon_merolae 26
Porphyridium_purpureum_02_2012 26
Thecamonas_trahens_ATCC_50062_ 28
Bigelowiella_natans_CCMP2755_22 36
Giardia_lamblia_2.3 25
Cyanophora_paradoxa_ 9
Leishmania_mexicana_2.4 39
Leishmania_major_strain_Friedlin_ 35
Leishmania_infantum_JPCM5_2.4 32
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 35
Trypanosoma_vivax_ 38
Trypanosoma_cruzi_strain_CL_Brener 24
Trypanosoma_congolense_2.4 40
Trypanosoma_brucei_gambiense_v4.1 37
Trypanosoma_brucei_TREU927_v4.1 34
Ectocarpus_siliculosus 36
Aureococcus_anophagefferens_ 15
Albugo_laibachii_22 36
Pythium_iwayamai_DAOM_BR242034_22 28
Pythium_arrhenomanes_ATCC_12531_22 30
Pythium_ultimum_v1.7-2 23
Pythium_aphanidermatum_DAOM_BR444_22 23
Pythium_irregulare_DAOM_BR486_22 30
Pythium_vexans_DAOM_BR484_22 24
Phytophthora_ramorum_1.1   (Sudden oak death agent)   17
Phytophthora_sojae_1.1 20
Phytophthora_infestans_T30-4_ 30
Phytophthora_capsici_ 17
Hyaloperonospora_arabidopsidis_22 19
Phaeodactylum_tricornutumCCAP_1055/1 17
Fragilariopsis_cylindrus 42
Thalassiosira_pseudonana_CCMP1335 23
Perkinsus_marinus_ATCC_50983_ 27
Paramecium_tetraurelia_ 68
Tetrahymena_thermophila_SB210_1_ 76
Ichthyophthirius_multifiliis_strain_G5_ 12
Cryptosporidium_hominis 10
Cryptosporidium_muris 20
Cryptosporidium_parvum_Iowa_II 20
Neospora_caninum 32
Toxoplasma_gondii_VEG 38
Toxoplasma_gondii_ME49 42
Toxoplasma_gondii_GT1 41
Babesia_bovis_T2Bo_ 25
Theileria_parva__ 9
Theileria_annulata 13
Plasmodium_falciparum_3D7_ 17
Plasmodium_vivax_SaI-1_7.0 24
Plasmodium_knowlesi_strain_H_ 21
Plasmodium_yoelii_ssp._yoelii_1_ 20
Plasmodium_chabaudi_ 19
Plasmodium_berghei_ANKA_ 23
Symbiodinium_minutum_clade_B1_v1.2 26
Naegleria_gruberi_ 42
Trichomonas_vaginalis_ 31
Guillardia_theta_CCMP2712_v1.0_ 32
Emiliania_huxleyi_CCMP1516_ 13
Leptolyngbya_sp._PCC_7376 1
Acaryochloris_marina_MBIC11017 1
Microcoleus_sp._PCC_7113 1
Anabaena_variabilis_ATCC_29413 0
Frankia_sp._EAN1pec 0
Thermomonospora_curvata_DSM_43183 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Micromonospora_sp._L5 0
Anaerolinea_thermophila_UNI-1 1
Roseiflexus_sp._RS-1 0
Clostridium_cellulolyticum_H10 1
Chloroherpeton_thalassium_ATCC_35110 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 1
Flexibacter_litoralis_DSM_6794 0
Cytophaga_hutchinsonii_ATCC_33406 0
Maribacter_sp._HTCC2170 1
Muricauda_ruestringensis_DSM_13258 0
Rhodopirellula_baltica_SH_1 1
Opitutus_terrae_PB90-1 1
Kosmotoga_olearia_TBF_19.5.1 1
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 0
Terriglobus_saanensis_SP1PR4 1
Candidatus_Nitrospira_defluvii 0
Helicobacter_pylori_B38 1
Haliangium_ochraceum_DSM_14365 1
Magnetococcus_marinus_MC-1 0
Shewanella_loihica_PV-4 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_haloplanktis_TAC125 0
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Pseudomonas_fulva_12-X 0
Pseudomonas_putida_F1 0
Methylophaga_sp._JAM1 0
Fervidicoccus_fontis_Kam940 0
Staphylothermus_hellenicus_DSM_12710 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   59
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   34
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   18
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   16
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   23
Cryptococcus_neoformans_var._grubii_H99_ 23
Cryptococcus_neoformans_B-3501A_ 21
Cryptococcus_neoformans_JEC21_ 20
Paracoccidioides_brasiliensis_Pb01_ 30
Paracoccidioides_brasiliensis_Pb03_ 28
Coccidioides_posadasii_str._Silveira_ 28
Coccidioides_immitis_RMSCC_3703_ 18
Coccidioides_immitis_RMSCC_2394_ 27
Coccidioides_immitis_H538.4_ 21
Ajellomyces_dermatitidis_ER-3_ 37
Histoplasma_capsulatum_H143 28
Histoplasma_capsulatum_H88 31
Histoplasma_capsulatum_G186AR 36
Aspergillus_fumigatus_A1163_ 32
Candida_albicans_WO-1_ 28
Saccharomyces_cerevisiae_UC5 17
Saccharomyces_cerevisiae_PW5 15
Saccharomyces_cerevisiae_FL100 4
Saccharomyces_cerevisiae_CLIB324 8
Saccharomyces_cerevisiae_CBS7960 11
Saccharomyces_cerevisiae_YJM269 11
Saccharomyces_cerevisiae_T7 19
Saccharomyces_cerevisiae_FostersB 11
Saccharomyces_cerevisiae_FostersO 6
Saccharomyces_cerevisiae_VL3 13
Saccharomyces_cerevisiae_Vin13 13
Saccharomyces_cerevisiae_LalvinQA23 12
Saccharomyces_cerevisiae_AWRI796 13
Saccharomyces_cerevisiae_Sigma1278b 18
Saccharomyces_cerevisiae_W303 18
Saccharomyces_cerevisiae_JAY291 18
Saccharomyces_cerevisiae_AWRI1631 15
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_M22 3
Saccharomyces_cerevisiae_T73 5
Saccharomyces_cerevisiae_CLIB215 11
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 15
Saccharomyces_cerevisiae_YJM789 16
Saccharomyces_cerevisiae_RM11-1a 17
Saccharomyces_cerevisiae_RM11-1a_ 17
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   17
Schizosaccharomyces_pombe_972h-_ 15
Batrachochytrium_dendrobatidis_JEL423_ 28
Batrachochytrium_dendrobatidis_JAM81_ 17
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   37
Hordeum_vulgare_22   (Domesticated barley)   43
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   34
Trypanosoma_brucei_Lister_427_v4.1 36
Neospora_caninum_Nc-Liverpool_6.2 32
Plasmodium_falciparum_HB3_ 17
Plasmodium_falciparum_Dd2_ 13
Oscillatoria_acuminata_PCC_6304 1
Cyanothece_sp._PCC_7822 0
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 0
Bifidobacterium_asteroides_PRL2011 0
Echinicola_vietnamensis_DSM_17526 1
Helicobacter_pylori_BM012S 1
Helicobacter_pylori_BM012A 1
Helicobacter_pylori_SouthAfrica20 1
Helicobacter_pylori_UM298 1
Helicobacter_pylori_UM066 1
Helicobacter_pylori_UM037 1
Helicobacter_pylori_UM299 1
Helicobacter_pylori_UM032 1
Helicobacter_pylori_OK310 1
Helicobacter_pylori_OK113 1
Helicobacter_pylori_Rif2 1
Helicobacter_pylori_Rif1 1
Helicobacter_pylori_HUP-B14 1
Helicobacter_pylori_PeCan18 1
Helicobacter_pylori_Shi169 1
Helicobacter_pylori_Shi112 1
Helicobacter_pylori_Shi417 1
Helicobacter_pylori_XZ274 1
Helicobacter_pylori_Aklavik117 1
Helicobacter_pylori_SNT49 1
Helicobacter_pylori_Puno135 1
Helicobacter_pylori_Puno120 1
Helicobacter_pylori_ELS37 1
Helicobacter_pylori_Gambia94/24 1
Helicobacter_pylori_SouthAfrica7 1
Helicobacter_pylori_India7 1
Helicobacter_pylori_Lithuania75 1
Helicobacter_pylori_2017 1
Helicobacter_pylori_2018 1
Helicobacter_pylori_908 1
Helicobacter_pylori_F57 1
Helicobacter_pylori_F30 1
Helicobacter_pylori_F16 1
Helicobacter_pylori_Sat464 1
Helicobacter_pylori_Cuz20 1
Helicobacter_pylori_PeCan4 1
Helicobacter_pylori_SJM180 1
Helicobacter_pylori_B8 1
Helicobacter_pylori_52 1
Helicobacter_pylori_v225d 1
Helicobacter_pylori_83 1
Helicobacter_pylori_35A 1
Helicobacter_pylori_P12 1
Helicobacter_pylori_G27 1
Helicobacter_pylori_Shi470 1
Helicobacter_pylori_HPAG1 1
Helicobacter_pylori_51 1
Helicobacter_pylori_F32 1
Helicobacter_pylori_26695 1
Helicobacter_pylori_26695 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1
Shewanella_sp._MR-7 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_GB-1 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   45
Pan_troglodytes_69_2.1.4   (Chimpanzee)   35
Gorilla_gorilla_69_3.1   (Western gorilla)   38
Pongo_abelii_69_2   (Sumatran orangutan)   36
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   28
Macaca_mulatta_69_1   (Rhesus monkey)   37
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   38
Otolemur_garnettii_69_3   (Small-eared galago)   31
Microcebus_murinus_69_1   (Gray mouse lemur)   32
Rattus_norvegicus_69_3.4   (Norway rat)   34
Mus_musculus_69_38   (House mouse)   34
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   31
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   24
Cavia_porcellus_69_3   (Domestic guinea pig)   26
Oryctolagus_cuniculus_69_2   (Rabbit)   25
Ochotona_princeps_69   (American pika)   29
Tupaia_belangeri_69   (Northern tree shrew)   33
Sus_scrofa_69_10.2   (Pig)   27
Bos_taurus_69_3.1   (Cattle)   31
Vicugna_pacos_69_1   (Alpaca)   23
Tursiops_truncatus_69_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_69_1.0   (Domestic ferret)   32
Ailuropoda_melanoleuca_69_1   (Giant panda)   28
Canis_familiaris_69_3.1   (Dog)   39
Felis_catus_69   (Domestic cat)   31
Equus_caballus_69_2   (Horse)   25
Myotis_lucifugus_69_2.0   (Little brown bat)   30
Pteropus_vampyrus_69_1   (Large flying fox)   35
Sorex_araneus_69_1   (European shrew)   22
Erinaceus_europaeus_69   (Western European hedgehog)   30
Procavia_capensis_69_1   (Cape rock hyrax)   39
Loxodonta_africana_69_3   (African savanna elephant)   34
Echinops_telfairi_69   (Small Madagascar hedgehog)   31
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   31
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   27
Macropus_eugenii_69_1.0   (Tammar wallaby)   33
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   34
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   35
Ornithorhynchus_anatinus_69_5   (Platypus)   16
Petromyzon_marinus_69_7.0   (Sea lamprey)   7
Meleagris_gallopavo_69_2   (Turkey)   22
Gallus_gallus_69_2   (Chicken)   20
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   25
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   24
Anolis_carolinensis_69_2.0   (Green anole)   22
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   32
Latimeria_chalumnae_69_1   (Coelacanth)   35
Gadus_morhua_69_1   (Atlantic cod)   24
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   29
Takifugu_rubripes_69_4   (Torafugu)   34
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   28
Oryzias_latipes_69_1   (Japanese medaka)   26
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   31
Oreochromis_niloticus_69_1.0   (Nile tilapia)   33
Danio_rerio_69_9   (Zebrafish)   35
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_69   (Vase tunicate)   12
Drosophila_melanogaster_69_5   (Fruit fly)   28
Caenorhabditis_elegans_69_215   (Roundworm)   15
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   17
Arabidopsis_thaliana_10   (Thale cress)   38

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   96
Homo_sapiens__(NCBI_version)   (Human)   51
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   34
Loa_loa_v3.3_(Request)   (Eye worm)   22
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   18
Encephalitozoon_intestinalis__(endoparasite) 3
Encephalitozoon_cuniculi_(endoparasite) 4
Lotus_japonicus__(Early_assembly) 16
Malus_x_domestica_(Duplicate)   (Apple)   63
Ricinus_communis__(Early_assembly)   (Castor bean)   29
Nicotiana_benthamiana_0.4.4_(Early_draft) 55
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   36
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   37
Phoenix_dactylifera__(Early_draft)   (Date palm)   22
NCBI_plasmid_sequences_(Plasmids) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3
TargetDB__(Targets) 127
Protozoadb_2010_08_(Protozoadb) 711
Protein_Data_Bank_(all_PDB_sequenc) 28
STRING_v9.0.5_(STRING) 3013
NCBI_2017_08_genome 35609
Uniprot_2018_03_genome 210835
Core_Eukaryotic_Genes_458_(CEGMA) 8

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