SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,50998,50969 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50998 - Quinoprotein alcohol dehydrogenase-like
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   0
Sus_scrofa_76_10.2   (Pig)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Procavia_capensis_76_1   (Cape rock hyrax)   0
Saccoglossus_kowalevskii_v3.0 0
Takifugu_rubripes_76_4   (Torafugu)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Crassostrea_gigas_22   (Pacific oyster)   0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Monosiga_brevicollis_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Melampsora_laricis-populina_ 0
Sphaerobolus_stellatus_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Daldinia_eschscholzii_EC12_v1.0 0
Sporotrichum_thermophile_ATCC_42464_ 0
Trichoderma_atroviride_ 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Spizellomyces_punctatus_DAOM_BR117_ 0
Picea_abies   (Norway spruce)   1
Citrus_sinensis_v154   (Sweet orange)   3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 2
Chlorella_vulgaris_ 0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Tetrahymena_thermophila_SB210_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Streptosporangium_roseum_DSM_43021 1
Streptomyces_sp._PAMC26508 0
Intrasporangium_calvum_DSM_43043 0
Rhodopirellula_baltica_SH_1 1

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Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Ajellomyces_dermatitidis_ER-3_ 0
Saccharothrix_espanaensis_DSM_44229 0
Singulisphaera_acidiphila_DSM_18658 1
Sorangium_cellulosum_So0157-2 0

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Procavia_capensis_69_1   (Cape rock hyrax)   0
Ciona_intestinalis_69   (Vase tunicate)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 4
NCBI_2017_08_genome 57
Uniprot_2018_03_genome 270

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