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Domain combinations for _gap_,50998,50978,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50998 - Quinoprotein alcohol dehydrogenase-like
50978 - WD40 repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Sus_scrofa_76_10.2   (Pig)   2
Vicugna_pacos_76_1   (Alpaca)   1
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Saccoglossus_kowalevskii_v3.0 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   1
Danio_rerio_76_9   (Zebrafish)   2
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Atta_cephalotes_v1.1 1
Drosophila_grimshawi_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_yakuba_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_virilis_1.2 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   1
Sarcoptes_scabiei 1
Echinococcus_multilocularis_ 1
Acropora_digitifera_v1.0 0
Amphimedon_queenslandica 2
Proterospongia_sp._ATCC_50818_ 3
Capsaspora_owczarzaki_ATCC_30864_ 2
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Hydnomerulius_pinastri_v2.0 1
Scleroderma_citrinum_Foug_A_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Verticillium_albo-atrum_VaMs.102_ 1
Fusarium_graminearum_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Leptosphaeria_maculans_22 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 0
Dothistroma_septosporum 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Trichophyton_equinum_CBS_127.97_ 1
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_rubrum_CBS_118892_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_versicolor_v1.0 0
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_tubingensis_v1.0 0
Penicillium_marneffei_ATCC_18224_ 2
Candida_albicans_SC5314 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Spizellomyces_punctatus_DAOM_BR117_ 0
Selaginella_moellendorffii_ 1
Gossypium_raimondii_v221 3
Fragaria_vesca_   (Wild strawberry)   1
Manihot_esculenta_v147   (Cassava)   1
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   1
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   1
Oryza_brachyantha_22   (Malo sina)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 0
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 2
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 4
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Fragilariopsis_cylindrus 1
Paramecium_tetraurelia_ 1
Tetrahymena_thermophila_SB210_1_ 2
Ichthyophthirius_multifiliis_strain_G5_ 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 2
Naegleria_gruberi_ 2
Trichomonas_vaginalis_ 3
Guillardia_theta_CCMP2712_v1.0_ 1
Geitlerinema_sp._PCC_7407 0
Frankia_sp._EAN1pec 1
Streptomyces_scabiei_87.22 0
Rhodococcus_erythropolis_PR4 0
Haliscomenobacter_hydrossis_DSM_1100 0
Turneriella_parva_DSM_21527 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Histoplasma_capsulatum_G186AR 1
Aspergillus_fumigatus_A1163_ 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Cyanothece_sp._PCC_7822 0
Saccharothrix_espanaensis_DSM_44229 0
Mycobacterium_gilvum_Spyr1 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Sus_scrofa_69_10.2   (Pig)   2
Vicugna_pacos_69_1   (Alpaca)   1
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Danio_rerio_69_9   (Zebrafish)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   1
Loa_loa_v3.3_(Request)   (Eye worm)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
NCBI_plasmid_sequences_(Plasmids) 0
Protozoadb_2010_08_(Protozoadb) 18
STRING_v9.0.5_(STRING) 31
NCBI_2017_08_genome 318
Uniprot_2018_03_genome 3447
TargetDB__(Targets) 0

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