SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,51110,_gap_,57414,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51110 - alpha-D-mannose-specific plant lectins
57414 - Hairpin loop containing domain-like
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 2
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   2
Thellungiella_halophila_v173 0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Glycine_max_v109   (Soybean)   2
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   1
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   2
Aquilegia_coerulea_v195 1
Triticum_urartu_22 1
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 2
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   2
Musa_acuminata_22   (Wild Malaysian banana)   1

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Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 5
NCBI_2017_08_genome 32
Uniprot_2018_03_genome 1064

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