SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for _gap_,52047 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   86
Pan_troglodytes_76_2.1.4   (Chimpanzee)   34
Gorilla_gorilla_76_3.1   (Western gorilla)   40
Pongo_abelii_76_2   (Sumatran orangutan)   27
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   21
Papio_anubis_76   (Olive baboon)   27
Macaca_mulatta_76_1   (Rhesus monkey)   39
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30
Otolemur_garnettii_76_3   (Small-eared galago)   23
Microcebus_murinus_76_1   (Gray mouse lemur)   24
Rattus_norvegicus_76_5.0   (Norway rat)   41
Mus_musculus_76_38   (House mouse)   144
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   21
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   41
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   21
Cavia_porcellus_76_3   (Domestic guinea pig)   23
Oryctolagus_cuniculus_76_2   (Rabbit)   19
Ochotona_princeps_76   (American pika)   19
Tupaia_belangeri_76   (Northern tree shrew)   12
Sus_scrofa_76_10.2   (Pig)   19
Bos_taurus_76_3.1   (Cattle)   37
Ovis_aries_76_3.1   (Sheep)   29
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   17
Ailuropoda_melanoleuca_76_1   (Giant panda)   19
Canis_familiaris_76_3.1   (Dog)   22
Felis_catus_76_6.2   (Domestic cat)   15
Equus_caballus_76_2   (Horse)   18
Myotis_lucifugus_76_2.0   (Little brown bat)   43
Pteropus_vampyrus_76_1   (Large flying fox)   14
Sorex_araneus_76_1   (European shrew)   11
Erinaceus_europaeus_76   (Western European hedgehog)   18
Procavia_capensis_76_1   (Cape rock hyrax)   12
Loxodonta_africana_76_3   (African savanna elephant)   27
Echinops_telfairi_76   (Small Madagascar hedgehog)   31
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   27
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_76_1.0   (Tammar wallaby)   14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   25
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   15
Ornithorhynchus_anatinus_76_5   (Platypus)   12
Saccoglossus_kowalevskii_v3.0 15
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   13
Anas_platyrhynchos_76_1.0   (Mallard)   10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   23
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   15
Anolis_carolinensis_76_2.0   (Green anole)   14
Xenopus_laevis_   (African clawed frog)   13
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   18
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   18
Gadus_morhua_76_1   (Atlantic cod)   13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   26
Takifugu_rubripes_76_4   (Torafugu)   42
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   16
Oryzias_latipes_76_1   (Japanese medaka)   26
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15
Poecilia_formosa_76   (Amazon molly)   24
Oreochromis_niloticus_76_1.0   (Nile tilapia)   50
Astyanax_mexicanus_76   (Mexican tetra)   38
Danio_rerio_76_9   (Zebrafish)   86
Oikopleura_dioica 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   23
Adineta_vaga 28
Octopus_bimaculoides_280 11
Crassostrea_gigas_22   (Pacific oyster)   9
Lottia_gigantea_   (Owl limpet)   6
Helobdella_robusta_ 9
Capitella_sp._I_ 35
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   8
Drosophila_grimshawi_1.3 8
Drosophila_willistoni_1.3 12
Drosophila_pseudoobscura_2.13 12
Drosophila_persimilis_1.3 12
Drosophila_suzukii 10
Drosophila_yakuba_1.3 14
Drosophila_simulans_1.3 12
Drosophila_sechellia_1.3 14
Drosophila_melanogaster_76_5   (Fruit fly)   29
Drosophila_erecta_1.3 12
Drosophila_ananassae_1.3 12
Drosophila_virilis_1.2 10
Drosophila_mojavensis_1.3 10
Megaselia_scalaris_22 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   9
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9
Anopheles_darlingi_22   (American malaria mosquito)   6
Anopheles_gambiae_49_3j   (African malaria mosquito)   5
Tribolium_castaneum_3.0   (Red flour beetle)   7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   6
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   25
Strigamia_maritima_22 13
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 12
Caenorhabditis_elegans_76_235   (Roundworm)   10
Caenorhabditis_briggsae_2 5
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 4
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 27
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 4
Amphimedon_queenslandica 46
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 9
Monosiga_brevicollis_ 7
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 5
Conidiobolus_coronatus_NRRL28638_v1.0 127
Mortierella_verticillata_NRRL_6337_ 63
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 6
Mucor_circinelloides_ 7
Rhizomucor_miehei_CAU432_ 8
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 4
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 7
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 29
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 24
Melampsora_laricis-populina_ 55
Rhodotorula_graminis_WP1_v1.0 13
Sporobolomyces_roseus_IAM_13481_ 9
Microbotryum_violaceum_22 10
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 107
Piloderma_croceum_F_1598_v1.0 42
Serpula_lacrymans_var._lacrymans_S7.9_ 15
Coniophora_puteana 54
Hydnomerulius_pinastri_v2.0 46
Paxillus_rubicundulus_Ve08.2h10_v1.0 16
Pisolithus_microcarpus_441_v1.0 21
Pisolithus_tinctorius_Marx_270_v1.0 14
Scleroderma_citrinum_Foug_A_v1.0 25
Coprinopsis_cinerea_okayama7_130_v3 79
Pleurotus_ostreatus_   (Oyster mushroom)   41
Amanita_thiersii_Skay4041_v1.0 26
Amanita_muscaria_Koide_v1.0   (Fly agaric)   58
Galerina_marginata_v1.0 116
Hebeloma_cylindrosporum_h7_v2.0 109
Laccaria_bicolor_S238N-H82_ 82
Agaricus_bisporus_var._bisporus_ 42
Schizophyllum_commune_ 103
Stereum_hirsutum_FP-91666_SS1__v1.0 48
Heterobasidion_annosum_ 16
Gloeophyllum_trabeumv1.0 49
Punctularia_strigosozonata_v1.0 34
Sebacina_vermifera_MAFF_305830_v1.0 91
Fomitiporia_mediterranea_v1.0 32
Tulasnella_calospora_AL13/4D_v1.0 100
Postia_placenta_ 37
Wolfiporia_cocos_MD-104_SS10__v1.0 27
Fomitopsis_pinicolav1.0 25
Fomitopsis_pinicola_FP-58527_SS1_v3.0 22
Phanerochaete_chrysosporium_RP-78_2.1 25
Dichomitus_squalens 21
Trametes_versicolor_v1.0 47
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 6
Apiospora_montagnei_NRRL_25634_v1.0 8
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 4
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 8
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   6
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 5
Fusarium_graminearum_ 6
Nectria_haematococca_mpVI_ 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 3
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 3
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4
Trichoderma_harzianum_CBS_226.95_v1.0 8
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 6
Leptosphaeria_maculans_22 5
Setosphaeria_turcica_v1.0 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6
Cochliobolus_victoriae_FI3_v1.0 8
Cochliobolus_carbonum_26-R-13_v1.0 7
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4
Alternaria_brassicicola_ 3
Cochliobolus_lunatus_m118_v2.0 9
Pyrenophora_teres_f._teres_22 6
Pyrenophora_tritici-repentis_ 7
Stagonospora_nodorum_ 10
Mycosphaerella_graminicola_IPO323_ 5
Zasmidium_cellare_ATCC_36951_v1.0 16
Dothistroma_septosporum 10
Septoria_musiva_v1.0 8
Mycosphaerella_fijiensis_CIRAD86_ 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 15
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 6
Penicillium_chrysogenum_v1.0 6
Aspergillus_acidus_v1.0 6
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 12
Aspergillus_nidulans_FGSC_A4_ 9
Aspergillus_sydowii_v1.0 6
Aspergillus_versicolor_v1.0 13
Aspergillus_glaucus 7
Aspergillus_carbonarius_ITEM_5010_ 7
Neosartorya_fischeri_NRRL_181_ 5
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 10
Aspergillus_wentii_v1.0 12
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 6
Aspergillus_niger_ATCC_1015_ 7
Aspergillus_flavus_NRRL3357_ 7
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 9
Tuber_melanosporum_Mel28_22 9
Tuber_melanosporum_Vittad_   (Perigord truffle)   9
Hansenula_polymorpha_v2.0 4
Dekkera_bruxellensis_CBS_2499_v2.0 5
Pichia_membranifaciensv1.0 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 9
Candida_parapsilosis_ 3
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 8
Pichia_pastoris_GS115_ 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 5
Yarrowia_lipolytica_CLIB122 2
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 3
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 7
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 5
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_japonicus_yFS275_ 0
Catenaria_anguillulae_PL171_v1.0 9
Allomyces_macrogynus_ATCC_38327_ 84
Spizellomyces_punctatus_DAOM_BR117_ 14
Dictyostelium_discoideum 15
Dictyostelium_purpureum_ 15
Entamoeba_dispar_1.2 5
Entamoeba_invadens_1.2 11
Entamoeba_histolytica_1 7
Selaginella_moellendorffii_ 19
Pinus_taeda   (Loblolly pine)   13
Picea_abies   (Norway spruce)   6
Eucalyptus_grandis_v201   (Rose gum)   38
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9
Gossypium_raimondii_v221 32
Citrus_clementina_v165 24
Citrus_sinensis_v154   (Sweet orange)   35
Thellungiella_halophila_v173 12
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12
Capsella_rubella_v183 13
Arabidopsis_lyrata_   (Lyrate rockcress)   12
Arabidopsis_thaliana_10   (Thale cress)   23
Carica_papaya_   (Papaya)   5
Medicago_truncatula_   (Barrel medic)   46
Phaseolus_vulgaris_v186   (French bean)   12
Glycine_max_v109   (Soybean)   15
Cucumis_sativus_v122   (Cucumber)   11
Fragaria_vesca_   (Wild strawberry)   17
Malus_domestica_v196   (Apple)   27
Prunus_persica_v139   (Peach)   11
Linum_usitatissimum_v200   (Flax)   22
Manihot_esculenta_v147   (Cassava)   15
Populus_trichocarpa_v156   (Black cottonwood)   11
Vitis_vinifera_   (Wine grape)   8
Mimulus_guttatus_v140   (Spotted monkey flower)   9
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   20
Actinidia_chinensis_Hongyang_ 18
Aquilegia_coerulea_v195 22
Triticum_urartu_22 33
Triticum_aestivum_22   (Bread wheat)   61
Aegilops_tauschii_22 52
Brachypodium_distachyon_   (Stiff brome)   18
Oryza_barthii_22   (African wild rice)   27
Oryza_meridionalis_22 24
Oryza_glumaepatula_22 21
Oryza_glaberrima   (African rice)   21
Oryza_punctata_22 19
Oryza_nivara_22 27
Oryza_brachyantha_22   (Malo sina)   13
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   26
Oryza_sativa_v193   (Rice)   26
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   22
Panicum_virgatum_v202   (Switchgrass)   54
Setaria_italica_v164   (Foxtail millet)   19
Zea_mays_subsp._mays_   (Maize)   17
Zea_mays_v181   (Maize)   19
Sorghum_bicolor_   (Sorghum)   13
Musa_balbisiana   (Balbis banana)   8
Musa_acuminata_22   (Wild Malaysian banana)   10
Amborella_trichopoda_22 4
Physcomitrella_patens 6
Coccomyxa_subellipsoidea_sp._C-169_v2 6
Asterochloris_sp._Cgr/DA1pho_v1.0 5
Chlorella_variabilis_sp._NC64A_ 8
Chlorella_vulgaris_ 5
Volvox_carteri_f._nagariensis_ 13
Volvox_carteri_v199 9
Chlamydomonas_reinhardtii_4.0 12
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 4
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 0
Thecamonas_trahens_ATCC_50062_ 9
Bigelowiella_natans_CCMP2755_22 7
Giardia_lamblia_2.3 2
Cyanophora_paradoxa_ 50
Leishmania_mexicana_2.4 10
Leishmania_major_strain_Friedlin_ 12
Leishmania_infantum_JPCM5_2.4 10
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 9
Trypanosoma_vivax_ 10
Trypanosoma_cruzi_strain_CL_Brener 4
Trypanosoma_congolense_2.4 9
Trypanosoma_brucei_gambiense_v4.1 8
Trypanosoma_brucei_TREU927_v4.1 8
Ectocarpus_siliculosus 16
Aureococcus_anophagefferens_ 5
Albugo_laibachii_22 7
Pythium_iwayamai_DAOM_BR242034_22 35
Pythium_arrhenomanes_ATCC_12531_22 18
Pythium_ultimum_v1.7-2 27
Pythium_aphanidermatum_DAOM_BR444_22 19
Pythium_irregulare_DAOM_BR486_22 28
Pythium_vexans_DAOM_BR484_22 17
Phytophthora_ramorum_1.1   (Sudden oak death agent)   17
Phytophthora_sojae_1.1 17
Phytophthora_infestans_T30-4_ 24
Phytophthora_capsici_ 9
Hyaloperonospora_arabidopsidis_22 4
Phaeodactylum_tricornutumCCAP_1055/1 12
Fragilariopsis_cylindrus 27
Thalassiosira_pseudonana_CCMP1335 9
Perkinsus_marinus_ATCC_50983_ 5
Paramecium_tetraurelia_ 13
Tetrahymena_thermophila_SB210_1_ 99
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 2
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 2
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 3
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 3
Symbiodinium_minutum_clade_B1_v1.2 60
Naegleria_gruberi_ 67
Trichomonas_vaginalis_ 7
Guillardia_theta_CCMP2712_v1.0_ 11
Emiliania_huxleyi_CCMP1516_ 104
Rivularia_sp._PCC_7116 2
Nostoc_sp._PCC_7524 1
Catenulispora_acidiphila_DSM_44928 2
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 2
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 1
Amycolatopsis_mediterranei_U32 1
Corynebacterium_glutamicum_R 0
Herpetosiphon_aurantiacus_DSM_785 2
Clostridium_clariflavum_DSM_19732 0
Clostridium_thermocellum_ATCC_27405 0
Syntrophobotulus_glycolicus_DSM_8271 0
Clostridium_phytofermentans_ISDg 0
Enterococcus_hirae_ATCC_9790 0
Lactobacillus_acidophilus_30SC 0
Listeria_innocua_Clip11262 0
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Listeria_ivanovii_subsp._ivanovii_PAM_55 0
Candidatus_Amoebophilus_asiaticus_5a2 6
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 1
Parabacteroides_distasonis_ATCC_8503 0
Porphyromonas_asaccharolytica_DSM_20707 0
Bacteroides_thetaiotaomicron_VPI-5482 2
Maribacter_sp._HTCC2170 3
Zobellia_galactanivorans 2
Cellulophaga_lytica_DSM_7489 0
Flavobacterium_branchiophilum_FL-15 0
Waddlia_chondrophila_WSU_86-1044 1
Candidatus_Protochlamydia_amoebophila_UWE25 4
Parachlamydia_acanthamoebae_UV-7 0
Simkania_negevensis_Z 2
Isosphaera_pallida_ATCC_43644 6
Planctomyces_brasiliensis_DSM_5305 1
Rhodopirellula_baltica_SH_1 4
Pirellula_staleyi_DSM_6068 5
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Treponema_primitia_ZAS-2 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Geobacter_uraniireducens_Rf4 1
Geobacter_lovleyi_SZ 1
Geobacter_sulfurreducens_KN400 1
Geobacter_metallireducens_GS-15 1
Pelobacter_propionicus_DSM_2379 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 1
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Burkholderia_rhizoxinica_HKI_454 0
Ralstonia_solanacearum_CFBP2957 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
alpha_proteobacterium_HIMB5 1
Rickettsia_bellii_OSU_85-389 1
Rickettsia_felis_URRWXCal2 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 0
Candidatus_Rickettsia_amblyommii_str._GAT-30V 0
Ferrimonas_balearica_DSM_9799 0
Marinomonas_mediterranea_MMB-1 1
Coxiella_burnetii_Dugway_5J108-111 1
Legionella_longbeachae_NSW150 0
Legionella_pneumophila_str._Corby 0
Erwinia_sp._Ejp617 1
Erwinia_pyrifoliae_Ep1/96 1
Pseudomonas_sp._TKP 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_sp._VLB120 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   25
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   24
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 4
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 4
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 4
Aspergillus_fumigatus_A1163_ 5
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 3
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 5
Saccharomyces_cerevisiae_VL3 5
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 3
Saccharomyces_cerevisiae_AWRI796 2
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 6
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 3
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Batrachochytrium_dendrobatidis_JEL423_ 12
Batrachochytrium_dendrobatidis_JAM81_ 8
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   16
Hordeum_vulgare_22   (Domesticated barley)   32
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   34
Trypanosoma_brucei_Lister_427_v4.1 8
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 2
Chamaesiphon_minutus_PCC_6605 1
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Corynebacterium_glutamicum_SCgG2 0
Corynebacterium_glutamicum_SCgG1 0
Clostridium_thermocellum_DSM_1313 0
Roseburia_intestinalis_XB6B4 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Enterococcus_faecalis_V583 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_R6 0
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Bacillus_toyonensis_BCT-7112 0
Emticicia_oligotrophica_DSM_17448 2
Nonlabens_dokdonensis_DSW-6 0
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_interrogans_serovar_Lai_str._56601 0
Geobacter_sulfurreducens_PCA 1
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 3
Pandoraea_pnomenusa_3kgm 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Rickettsia_bellii_RML369-C 0
Rickettsia_massiliae_str._AZT80 0
Alcanivorax_dieselolei_B5 0
Coxiella_burnetii_CbuK_Q154 1
Coxiella_burnetii_CbuG_Q212 1
Coxiella_burnetii_RSA_493 1
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Legionella_pneumophila_2300/99_Alcoy 0
Erwinia_pyrifoliae_DSM_12163 1
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_GB-1 0
Pseudomonas_fluorescens_F113 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   38
Pan_troglodytes_69_2.1.4   (Chimpanzee)   34
Gorilla_gorilla_69_3.1   (Western gorilla)   31
Pongo_abelii_69_2   (Sumatran orangutan)   27
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   19
Macaca_mulatta_69_1   (Rhesus monkey)   28
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   16
Otolemur_garnettii_69_3   (Small-eared galago)   23
Microcebus_murinus_69_1   (Gray mouse lemur)   24
Rattus_norvegicus_69_3.4   (Norway rat)   49
Mus_musculus_69_38   (House mouse)   103
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   21
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   39
Cavia_porcellus_69_3   (Domestic guinea pig)   20
Oryctolagus_cuniculus_69_2   (Rabbit)   19
Ochotona_princeps_69   (American pika)   19
Tupaia_belangeri_69   (Northern tree shrew)   12
Sus_scrofa_69_10.2   (Pig)   17
Bos_taurus_69_3.1   (Cattle)   36
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   16
Ailuropoda_melanoleuca_69_1   (Giant panda)   18
Canis_familiaris_69_3.1   (Dog)   19
Felis_catus_69   (Domestic cat)   13
Equus_caballus_69_2   (Horse)   18
Myotis_lucifugus_69_2.0   (Little brown bat)   43
Pteropus_vampyrus_69_1   (Large flying fox)   14
Sorex_araneus_69_1   (European shrew)   11
Erinaceus_europaeus_69   (Western European hedgehog)   18
Procavia_capensis_69_1   (Cape rock hyrax)   12
Loxodonta_africana_69_3   (African savanna elephant)   23
Echinops_telfairi_69   (Small Madagascar hedgehog)   31
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   14
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6
Macropus_eugenii_69_1.0   (Tammar wallaby)   14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   23
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   15
Ornithorhynchus_anatinus_69_5   (Platypus)   10
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12
Anolis_carolinensis_69_2.0   (Green anole)   13
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15
Latimeria_chalumnae_69_1   (Coelacanth)   8
Gadus_morhua_69_1   (Atlantic cod)   12
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   23
Takifugu_rubripes_69_4   (Torafugu)   22
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11
Oryzias_latipes_69_1   (Japanese medaka)   22
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   39
Danio_rerio_69_9   (Zebrafish)   51
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   14
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   16

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   74
Homo_sapiens__(NCBI_version)   (Human)   47
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   104
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4
Moniliophthora_perniciosa_FA553__(Genome_survey) 4
Pinus_sylvestris__(Incomplete)   (Scots pine)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   27
Ricinus_communis__(Early_assembly)   (Castor bean)   11
Nicotiana_benthamiana_0.4.4_(Early_draft) 17
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
NCBI_plasmid_sequences_(Plasmids) 0
Protein_Data_Bank_(all_PDB_sequenc) 34
Protozoadb_2010_08_(Protozoadb) 133
STRING_v9.0.5_(STRING) 1467
NCBI_2017_08_genome 15873
Uniprot_2018_03_genome 62484
NCBI_viral_sequences_(Viral) 2
TargetDB__(Targets) 87
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3
UniProt__viral_sequences_(Viral) 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]