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Domain combinations for _gap_,52047,52047,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52047 - RNI-like
52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   3
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   4
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   3
Ovis_aries_76_3.1   (Sheep)   3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   3
Canis_familiaris_76_3.1   (Dog)   3
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   6
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   2
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 1
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   4
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 2
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 1
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Drosophila_grimshawi_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Daphnia_pulex_   (Common water flea)   1
Onchocerca_volvulus_22 1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Acropora_digitifera_v1.0 2
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 3
Rhizomucor_miehei_CAU432_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Coniophora_puteana 1
Schizophyllum_commune_ 3
Sebacina_vermifera_MAFF_305830_v1.0 1
Trametes_versicolor_v1.0 1
Ashbya_gossypii_ATCC_10895_ 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 6
Entamoeba_invadens_1.2 1
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 4
Citrus_clementina_v165 3
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Capsella_rubella_v183 2
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   2
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   3
Vitis_vinifera_   (Wine grape)   1
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 0
Triticum_urartu_22 3
Triticum_aestivum_22   (Bread wheat)   2
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 7
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 2
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3
Oryza_sativa_v193   (Rice)   3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   3
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Volvox_carteri_f._nagariensis_ 0
Chlamydomonas_reinhardtii_4.0 2
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Thecamonas_trahens_ATCC_50062_ 1
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 1
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_congolense_2.4 1
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 2
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Fragilariopsis_cylindrus 2
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 6
Neospora_caninum 1
Plasmodium_vivax_SaI-1_7.0 1
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 3
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 1
Candidatus_Protochlamydia_amoebophila_UWE25 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 1
Lactobacillus_acidophilus_La-14 1
Lactobacillus_acidophilus_NCFM 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   2
Ochotona_princeps_69   (American pika)   4
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   3
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   2
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   2
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   2
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3
Homo_sapiens__(NCBI_version)   (Human)   4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Malus_x_domestica_(Duplicate)   (Apple)   2
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
NCBI_2017_08_genome 2021
Protozoadb_2010_08_(Protozoadb) 11
TargetDB__(Targets) 5
STRING_v9.0.5_(STRING) 90
Uniprot_2018_03_genome 9152

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