SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,52058,52058,_gap_,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
52058 - L domain-like
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Proterospongia_sp._ATCC_50818_ 41
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 9
Pinus_taeda   (Loblolly pine)   21
Picea_abies   (Norway spruce)   12
Eucalyptus_grandis_v201   (Rose gum)   73
Theobroma_cacao_B97-61/B2_v1   (Cacao)   22
Gossypium_raimondii_v221 47
Citrus_clementina_v165 36
Citrus_sinensis_v154   (Sweet orange)   21
Thellungiella_halophila_v173 17
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   18
Capsella_rubella_v183 12
Arabidopsis_lyrata_   (Lyrate rockcress)   21
Arabidopsis_thaliana_10   (Thale cress)   15
Carica_papaya_   (Papaya)   6
Medicago_truncatula_   (Barrel medic)   41
Phaseolus_vulgaris_v186   (French bean)   30
Glycine_max_v109   (Soybean)   30
Cucumis_sativus_v122   (Cucumber)   15
Fragaria_vesca_   (Wild strawberry)   17
Malus_domestica_v196   (Apple)   48
Prunus_persica_v139   (Peach)   20
Linum_usitatissimum_v200   (Flax)   36
Manihot_esculenta_v147   (Cassava)   15
Populus_trichocarpa_v156   (Black cottonwood)   50
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   19
Solanum_lycopersicum_v.2.3   (Tomato)   18
Solanum_tuberosum_   (Potato)   13
Actinidia_chinensis_Hongyang_ 21
Aquilegia_coerulea_v195 23
Triticum_urartu_22 24
Triticum_aestivum_22   (Bread wheat)   44
Aegilops_tauschii_22 38
Brachypodium_distachyon_   (Stiff brome)   22
Oryza_barthii_22   (African wild rice)   33
Oryza_meridionalis_22 33
Oryza_glumaepatula_22 26
Oryza_glaberrima   (African rice)   24
Oryza_punctata_22 32
Oryza_nivara_22 32
Oryza_brachyantha_22   (Malo sina)   23
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   44
Oryza_sativa_v193   (Rice)   43
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   28
Panicum_virgatum_v202   (Switchgrass)   37
Setaria_italica_v164   (Foxtail millet)   35
Zea_mays_subsp._mays_   (Maize)   20
Zea_mays_v181   (Maize)   24
Sorghum_bicolor_   (Sorghum)   29
Musa_balbisiana   (Balbis banana)   23
Musa_acuminata_22   (Wild Malaysian banana)   8
Amborella_trichopoda_22 12
Physcomitrella_patens 5
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Pythium_irregulare_DAOM_BR486_22 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   23
Hordeum_vulgare_22   (Domesticated barley)   59
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   42

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   13

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 8
Malus_x_domestica_(Duplicate)   (Apple)   48
Ricinus_communis__(Early_assembly)   (Castor bean)   22
Nicotiana_benthamiana_0.4.4_(Early_draft) 28
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   17
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   18
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
STRING_v9.0.5_(STRING) 223
NCBI_2017_08_genome 2619
Uniprot_2018_03_genome 34983

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]