SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,52058,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Danio_rerio_76_9   (Zebrafish)   1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Entamoeba_invadens_1.2 1
Selaginella_moellendorffii_ 12
Pinus_taeda   (Loblolly pine)   35
Picea_abies   (Norway spruce)   26
Eucalyptus_grandis_v201   (Rose gum)   92
Theobroma_cacao_B97-61/B2_v1   (Cacao)   42
Gossypium_raimondii_v221 105
Citrus_clementina_v165 53
Citrus_sinensis_v154   (Sweet orange)   90
Thellungiella_halophila_v173 81
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   66
Capsella_rubella_v183 65
Arabidopsis_lyrata_   (Lyrate rockcress)   37
Arabidopsis_thaliana_10   (Thale cress)   91
Carica_papaya_   (Papaya)   28
Medicago_truncatula_   (Barrel medic)   106
Phaseolus_vulgaris_v186   (French bean)   63
Glycine_max_v109   (Soybean)   93
Cucumis_sativus_v122   (Cucumber)   60
Fragaria_vesca_   (Wild strawberry)   42
Malus_domestica_v196   (Apple)   74
Prunus_persica_v139   (Peach)   44
Linum_usitatissimum_v200   (Flax)   68
Manihot_esculenta_v147   (Cassava)   44
Populus_trichocarpa_v156   (Black cottonwood)   77
Vitis_vinifera_   (Wine grape)   56
Mimulus_guttatus_v140   (Spotted monkey flower)   40
Solanum_lycopersicum_v.2.3   (Tomato)   45
Solanum_tuberosum_   (Potato)   46
Actinidia_chinensis_Hongyang_ 45
Aquilegia_coerulea_v195 47
Triticum_urartu_22 31
Triticum_aestivum_22   (Bread wheat)   65
Aegilops_tauschii_22 29
Brachypodium_distachyon_   (Stiff brome)   49
Oryza_barthii_22   (African wild rice)   51
Oryza_meridionalis_22 54
Oryza_glumaepatula_22 52
Oryza_glaberrima   (African rice)   44
Oryza_punctata_22 47
Oryza_nivara_22 61
Oryza_brachyantha_22   (Malo sina)   36
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   55
Oryza_sativa_v193   (Rice)   56
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   45
Panicum_virgatum_v202   (Switchgrass)   64
Setaria_italica_v164   (Foxtail millet)   45
Zea_mays_subsp._mays_   (Maize)   63
Zea_mays_v181   (Maize)   74
Sorghum_bicolor_   (Sorghum)   52
Musa_balbisiana   (Balbis banana)   57
Musa_acuminata_22   (Wild Malaysian banana)   86
Amborella_trichopoda_22 21
Physcomitrella_patens 7
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Chlorella_variabilis_sp._NC64A_ 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 4
Pythium_ultimum_v1.7-2 2
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   8
Phytophthora_sojae_1.1 11
Phytophthora_infestans_T30-4_ 7
Phytophthora_capsici_ 5
Hyaloperonospora_arabidopsidis_22 1
Thalassiosira_pseudonana_CCMP1335 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Photobacterium_profundum_SS9 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   36
Hordeum_vulgare_22   (Domesticated barley)   50
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   47
Pseudomonas_aeruginosa_MTB-1 1

Longest transcript per gene
Genome     Number
Danio_rerio_69_9   (Zebrafish)   1
Arabidopsis_thaliana_10   (Thale cress)   81

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 25
Malus_x_domestica_(Duplicate)   (Apple)   74
Ricinus_communis__(Early_assembly)   (Castor bean)   40
Nicotiana_benthamiana_0.4.4_(Early_draft) 67
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   44
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   45
Phoenix_dactylifera__(Early_draft)   (Date palm)   14
STRING_v9.0.5_(STRING) 431
NCBI_2017_08_genome 6098
TargetDB__(Targets) 1
Uniprot_2018_03_genome 36846

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