SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,52058,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   59
Pan_troglodytes_76_2.1.4   (Chimpanzee)   23
Gorilla_gorilla_76_3.1   (Western gorilla)   26
Pongo_abelii_76_2   (Sumatran orangutan)   19
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   19
Papio_anubis_76   (Olive baboon)   25
Macaca_mulatta_76_1   (Rhesus monkey)   31
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   36
Otolemur_garnettii_76_3   (Small-eared galago)   21
Microcebus_murinus_76_1   (Gray mouse lemur)   17
Rattus_norvegicus_76_5.0   (Norway rat)   25
Mus_musculus_76_38   (House mouse)   43
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   22
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   22
Cavia_porcellus_76_3   (Domestic guinea pig)   30
Oryctolagus_cuniculus_76_2   (Rabbit)   23
Ochotona_princeps_76   (American pika)   18
Tupaia_belangeri_76   (Northern tree shrew)   19
Sus_scrofa_76_10.2   (Pig)   22
Bos_taurus_76_3.1   (Cattle)   24
Ovis_aries_76_3.1   (Sheep)   21
Vicugna_pacos_76_1   (Alpaca)   15
Tursiops_truncatus_76_1   (Bottlenose dolphin)   22
Mustela_putorius_furo_76_1.0   (Domestic ferret)   24
Ailuropoda_melanoleuca_76_1   (Giant panda)   19
Canis_familiaris_76_3.1   (Dog)   24
Felis_catus_76_6.2   (Domestic cat)   18
Equus_caballus_76_2   (Horse)   22
Myotis_lucifugus_76_2.0   (Little brown bat)   24
Pteropus_vampyrus_76_1   (Large flying fox)   16
Sorex_araneus_76_1   (European shrew)   12
Erinaceus_europaeus_76   (Western European hedgehog)   17
Procavia_capensis_76_1   (Cape rock hyrax)   15
Loxodonta_africana_76_3   (African savanna elephant)   30
Echinops_telfairi_76   (Small Madagascar hedgehog)   15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   24
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_76_1.0   (Tammar wallaby)   14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   20
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   18
Ornithorhynchus_anatinus_76_5   (Platypus)   10
Saccoglossus_kowalevskii_v3.0 27
Petromyzon_marinus_76_7.0   (Sea lamprey)   6
Meleagris_gallopavo_76_2   (Turkey)   17
Gallus_gallus_76_4   (Chicken)   19
Anas_platyrhynchos_76_1.0   (Mallard)   16
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   15
Ficedula_albicollis_76_1.0   (Collared flycatcher)   17
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   25
Anolis_carolinensis_76_2.0   (Green anole)   23
Xenopus_laevis_   (African clawed frog)   10
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_76_1   (Coelacanth)   25
Lepisosteus_oculatus_76   (Spotted gar)   31
Gadus_morhua_76_1   (Atlantic cod)   15
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   16
Takifugu_rubripes_76_4   (Torafugu)   34
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   25
Oryzias_latipes_76_1   (Japanese medaka)   18
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   26
Poecilia_formosa_76   (Amazon molly)   31
Oreochromis_niloticus_76_1.0   (Nile tilapia)   35
Astyanax_mexicanus_76   (Mexican tetra)   24
Danio_rerio_76_9   (Zebrafish)   36
Oikopleura_dioica 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_76   (Vase tunicate)   7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   26
Adineta_vaga 28
Octopus_bimaculoides_280 13
Crassostrea_gigas_22   (Pacific oyster)   19
Lottia_gigantea_   (Owl limpet)   14
Helobdella_robusta_ 5
Capitella_sp._I_ 30
Danaus_plexippus_OGS1.0   (Monarch butterfly)   15
Heliconius_melpomene_   (Postman butterfly)   24
Bombyx_mori_   (Domestic silkworm)   16
Nasonia_vitripennis_   (Jewel wasp)   9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   10
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   15
Linepithema_humile_v1.1   (Argentine ant)   13
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   16
Atta_cephalotes_v1.1 13
Camponotus_floridanus_v3.3   (Florida carpenter ant)   13
Lucilia_cuprina   (Australian sheep blowfly)   24
Drosophila_grimshawi_1.3 22
Drosophila_willistoni_1.3 22
Drosophila_pseudoobscura_2.13 28
Drosophila_persimilis_1.3 23
Drosophila_suzukii 28
Drosophila_yakuba_1.3 27
Drosophila_simulans_1.3 23
Drosophila_sechellia_1.3 22
Drosophila_melanogaster_76_5   (Fruit fly)   52
Drosophila_erecta_1.3 28
Drosophila_ananassae_1.3 27
Drosophila_virilis_1.2 25
Drosophila_mojavensis_1.3 26
Megaselia_scalaris_22 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   39
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   41
Anopheles_darlingi_22   (American malaria mosquito)   40
Anopheles_gambiae_49_3j   (African malaria mosquito)   52
Tribolium_castaneum_3.0   (Red flour beetle)   33
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   11
Acyrthosiphon_pisum_   (Pea aphid)   10
Rhodnius_prolixus_22 9
Daphnia_pulex_   (Common water flea)   17
Strigamia_maritima_22 14
Sarcoptes_scabiei 10
Tetranychus_urticae_   (Two-spotted spider mite)   17
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10
Pristionchus_pacificus_ 11
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 6
Onchocerca_volvulus_22 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 17
Caenorhabditis_remanei_ 14
Caenorhabditis_elegans_76_235   (Roundworm)   19
Caenorhabditis_briggsae_2 19
Trichinella_spiralis_22 9
Hymenolepis_microstoma_ 5
Echinococcus_multilocularis_ 7
Echinococcus_granulosus_ 8
Taenia_solium_   (Pork tapeworm)   9
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   4
Acropora_digitifera_v1.0 15
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 3
Amphimedon_queenslandica 3
Trichoplax_adhaerens_ 6
Proterospongia_sp._ATCC_50818_ 10
Monosiga_brevicollis_ 9
Sphaeroforma_arctica_JP610_ 7
Capsaspora_owczarzaki_ATCC_30864_ 8
Conidiobolus_coronatus_NRRL28638_v1.0 26
Mortierella_verticillata_NRRL_6337_ 19
Phycomyces_blakesleeanus_ 9
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 5
Rhizomucor_miehei_CAU432_ 8
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 4
Ustilago_maydis_ 5
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 6
Rhodotorula_graminis_WP1_v1.0 7
Sporobolomyces_roseus_IAM_13481_ 5
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 9
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 10
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 5
Pisolithus_tinctorius_Marx_270_v1.0 7
Scleroderma_citrinum_Foug_A_v1.0 4
Coprinopsis_cinerea_okayama7_130_v3 6
Pleurotus_ostreatus_   (Oyster mushroom)   8
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   13
Galerina_marginata_v1.0 14
Hebeloma_cylindrosporum_h7_v2.0 9
Laccaria_bicolor_S238N-H82_ 10
Agaricus_bisporus_var._bisporus_ 9
Schizophyllum_commune_ 9
Stereum_hirsutum_FP-91666_SS1__v1.0 7
Heterobasidion_annosum_ 2
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 29
Fomitiporia_mediterranea_v1.0 5
Tulasnella_calospora_AL13/4D_v1.0 7
Postia_placenta_ 7
Wolfiporia_cocos_MD-104_SS10__v1.0 6
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 2
Trametes_versicolor_v1.0 11
Tremella_mesenterica_   (Witches' butter)   5
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 1
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 1
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 2
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 2
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 3
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4
Microsporum_canis_CBS_113480_ 3
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 1
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 5
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 1
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 2
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Dekkera_bruxellensis_CBS_2499_v2.0 4
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 7
Candida_tropicalis_MYA-3404_ 13
Candida_parapsilosis_ 7
Candida_albicans_SC5314 15
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 8
Pichia_stipitis_CBS_6054_ 9
Candida_guilliermondii_ATCC_6260_ 8
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 6
Debaromyces_hansenii 4
Wickerhamomyces_anomalus 4
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 3
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 3
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 11
Allomyces_macrogynus_ATCC_38327_ 29
Spizellomyces_punctatus_DAOM_BR117_ 6
Dictyostelium_discoideum 49
Dictyostelium_purpureum_ 102
Entamoeba_dispar_1.2 33
Entamoeba_invadens_1.2 67
Entamoeba_histolytica_1 13
Selaginella_moellendorffii_ 40
Pinus_taeda   (Loblolly pine)   51
Picea_abies   (Norway spruce)   34
Eucalyptus_grandis_v201   (Rose gum)   73
Theobroma_cacao_B97-61/B2_v1   (Cacao)   54
Gossypium_raimondii_v221 83
Citrus_clementina_v165 52
Citrus_sinensis_v154   (Sweet orange)   99
Thellungiella_halophila_v173 41
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   58
Capsella_rubella_v183 45
Arabidopsis_lyrata_   (Lyrate rockcress)   42
Arabidopsis_thaliana_10   (Thale cress)   42
Carica_papaya_   (Papaya)   24
Medicago_truncatula_   (Barrel medic)   81
Phaseolus_vulgaris_v186   (French bean)   33
Glycine_max_v109   (Soybean)   62
Cucumis_sativus_v122   (Cucumber)   27
Fragaria_vesca_   (Wild strawberry)   60
Malus_domestica_v196   (Apple)   147
Prunus_persica_v139   (Peach)   44
Linum_usitatissimum_v200   (Flax)   51
Manihot_esculenta_v147   (Cassava)   55
Populus_trichocarpa_v156   (Black cottonwood)   62
Vitis_vinifera_   (Wine grape)   45
Mimulus_guttatus_v140   (Spotted monkey flower)   29
Solanum_lycopersicum_v.2.3   (Tomato)   36
Solanum_tuberosum_   (Potato)   72
Actinidia_chinensis_Hongyang_ 54
Aquilegia_coerulea_v195 33
Triticum_urartu_22 44
Triticum_aestivum_22   (Bread wheat)   114
Aegilops_tauschii_22 70
Brachypodium_distachyon_   (Stiff brome)   64
Oryza_barthii_22   (African wild rice)   54
Oryza_meridionalis_22 61
Oryza_glumaepatula_22 54
Oryza_glaberrima   (African rice)   45
Oryza_punctata_22 49
Oryza_nivara_22 61
Oryza_brachyantha_22   (Malo sina)   38
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   71
Oryza_sativa_v193   (Rice)   70
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   52
Panicum_virgatum_v202   (Switchgrass)   172
Setaria_italica_v164   (Foxtail millet)   76
Zea_mays_subsp._mays_   (Maize)   65
Zea_mays_v181   (Maize)   58
Sorghum_bicolor_   (Sorghum)   64
Musa_balbisiana   (Balbis banana)   52
Musa_acuminata_22   (Wild Malaysian banana)   44
Amborella_trichopoda_22 23
Physcomitrella_patens 17
Coccomyxa_subellipsoidea_sp._C-169_v2 15
Asterochloris_sp._Cgr/DA1pho_v1.0 9
Chlorella_variabilis_sp._NC64A_ 15
Chlorella_vulgaris_ 10
Volvox_carteri_f._nagariensis_ 16
Volvox_carteri_v199 17
Chlamydomonas_reinhardtii_4.0 19
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 2
Bathycoccus_prasinos_ 4
Micromonas_sp._RCC299_ 9
Micromonas_pusilla_CCMP1545_v3.0 7
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 6
Thecamonas_trahens_ATCC_50062_ 25
Bigelowiella_natans_CCMP2755_22 6
Giardia_lamblia_2.3 6
Cyanophora_paradoxa_ 6
Leishmania_mexicana_2.4 20
Leishmania_major_strain_Friedlin_ 29
Leishmania_infantum_JPCM5_2.4 26
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 21
Trypanosoma_vivax_ 16
Trypanosoma_cruzi_strain_CL_Brener 10
Trypanosoma_congolense_2.4 9
Trypanosoma_brucei_gambiense_v4.1 12
Trypanosoma_brucei_TREU927_v4.1 14
Ectocarpus_siliculosus 26
Aureococcus_anophagefferens_ 7
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 22
Pythium_arrhenomanes_ATCC_12531_22 13
Pythium_ultimum_v1.7-2 21
Pythium_aphanidermatum_DAOM_BR444_22 19
Pythium_irregulare_DAOM_BR486_22 22
Pythium_vexans_DAOM_BR484_22 20
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5
Phytophthora_sojae_1.1 12
Phytophthora_infestans_T30-4_ 10
Phytophthora_capsici_ 11
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 6
Fragilariopsis_cylindrus 21
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 3
Paramecium_tetraurelia_ 11
Tetrahymena_thermophila_SB210_1_ 11
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 3
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 1
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 75
Naegleria_gruberi_ 27
Trichomonas_vaginalis_ 143
Guillardia_theta_CCMP2712_v1.0_ 6
Emiliania_huxleyi_CCMP1516_ 21
Trichodesmium_erythraeum_IMS101 0
Rivularia_sp._PCC_7116 1
Mycoplasma_fermentans_M64 1
Mycoplasma_hominis_ATCC_23114 0
Eggerthella_lenta_DSM_2243 1
Slackia_heliotrinireducens_DSM_20476 1
Coriobacterium_glomerans_PW2 4
Streptosporangium_roseum_DSM_43021 1
Streptomyces_bingchenggensis_BCW-1 1
Amycolatopsis_mediterranei_U32 0
Propionibacterium_propionicum_F0230a 1
Cellulomonas_fimi_ATCC_484 1
Arcanobacterium_haemolyticum_DSM_20595 1
Finegoldia_magna_ATCC_29328 2
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1
Eubacterium_siraeum 1
Ethanoligenens_harbinense_YUAN-3 1
Faecalibacterium_prausnitzii 1
Ruminococcus_sp. 2
Ruminococcus_bromii 0
Ruminococcus_albus_7 6
Desulfosporosinus_orientis_DSM_765 0
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfotomaculum_acetoxidans_DSM_771 0
Eubacterium_limosum_KIST612 0
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 1
[Ruminococcus]_obeum 0
Eubacterium_rectale_M104/1 5
Roseburia_intestinalis 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Clostridium_kluyveri_DSM_555 1
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 1
Clostridium_cellulovorans_743B 0
Clostridium_botulinum_A_str._ATCC_3502 1
Halanaerobium_praevalens_DSM_2228 0
Enterococcus_hirae_ATCC_9790 2
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_casei_ATCC_334 1
Lactobacillus_sakei_subsp._sakei_23K 1
Lactobacillus_plantarum_JDM1 5
Lactobacillus_buchneri_NRRL_B-30929 3
Lactobacillus_buchneri 4
Lactobacillus_brevis_ATCC_367 1
Pediococcus_claussenii_ATCC_BAA-344 1
Lactococcus_lactis_subsp._cremoris_MG1363 0
Streptococcus_intermedius_JTH08 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_uberis_0140J 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_agalactiae_A909 1
Streptococcus_suis_P1/7 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_innocua_Clip11262 3
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 11
Listeria_ivanovii_subsp._ivanovii_PAM_55 2
Solibacillus_silvestris_StLB046 1
Candidatus_Cloacamonas_acidaminovorans 0
Chloroherpeton_thalassium_ATCC_35110 1
Saprospira_grandis_str._Lewin 3
Chitinophaga_pinensis_DSM_2588 2
Flexibacter_litoralis_DSM_6794 1
Candidatus_Amoebophilus_asiaticus_5a2 2
Cyclobacterium_marinum_DSM_745 0
Fibrella_aestuarina 1
Dyadobacter_fermentans_DSM_18053 3
Cytophaga_hutchinsonii_ATCC_33406 3
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 1
Tannerella_forsythia_ATCC_43037 2
Paludibacter_propionicigenes_WB4 0
Odoribacter_splanchnicus_DSM_20712 4
Bacteroides_sp._CF50 2
Prevotella_melaninogenica_ATCC_25845 2
Prevotella_intermedia_17 5
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 0
Porphyromonas_asaccharolytica_DSM_20707 16
Porphyromonas_gingivalis_ATCC_33277 2
Alistipes_finegoldii_DSM_17242 5
Bacteroides_salanitronis_DSM_18170 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_thetaiotaomicron_VPI-5482 3
Bacteroides_fragilis_YCH46 2
Fluviicola_taffensis_DSM_16823 2
Croceibacter_atlanticus_HTCC2559 1
Muricauda_ruestringensis_DSM_13258 2
Cellulophaga_lytica_DSM_7489 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1
Capnocytophaga_ochracea_DSM_7271 2
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 5
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_johnsoniae_UW101 0
Parachlamydia_acanthamoebae_UV-7 1
Planctomyces_limnophilus_DSM_3776 1
Pirellula_staleyi_DSM_6068 1
Coraliomargarita_akajimensis_DSM_45221 0
Brachyspira_intermedia_PWS/A 2
Sphaerochaeta_coccoides_DSM_17374 1
Treponema_primitia_ZAS-2 1
Treponema_denticola_ATCC_35405 3
Desulfurispirillum_indicum_S5 0
Granulicella_tundricola_MP5ACTX9 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1
Helicobacter_hepaticus_ATCC_51449 1
Desulfatibacillum_alkenivorans_AK-01 0
Babela_massiliensis 1
Sorangium_cellulosum_'So_ce_56' 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_fulvus_HW-1 1
Ralstonia_solanacearum_CFBP2957 1
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Polymorphum_gilvum_SL003B-26A1 1
Sinorhizobium_fredii_NGR234 1
Candidatus_Liberibacter_asiaticus_str._psy62 1
Bradyrhizobium_japonicum_USDA_110 2
Ferrimonas_balearica_DSM_9799 0
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 1
Shewanella_pealeana_ATCC_700345 2
Hahella_chejuensis_KCTC_2396 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Thioalkalivibrio_sp._K90mix 0
Edwardsiella_ictaluri_93-146 2
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1
Shigella_sonnei_Ss046 6
Shigella_flexneri_5_str._8401 5
Shigella_dysenteriae_Sd197 6
Shigella_boydii_CDC_3083-94 5
Salmonella_bongori_NCTC_12419 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Pseudomonas_sp._TKP 2
Pseudomonas_sp._UW4 4
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 5
Pseudomonas_putida_F1 6
Pseudomonas_fluorescens_SBW25 3
Pseudomonas_sp._VLB120 6
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Thermoplasmatales_archaeon_BRNA1 1
Methanobrevibacter_ruminantium_M1 1
Acholeplasma_laidlawii_PG-8A 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   29
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   38
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   57
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   18
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 4
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 3
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 4
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 16
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   54
Hordeum_vulgare_22   (Domesticated barley)   123
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   68
Trypanosoma_brucei_Lister_427_v4.1 12
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 1
Crinalium_epipsammum_PCC_9333 1
Mycoplasma_fermentans_JER 1
Mycoplasma_fermentans_PG18 1
Adlercreutzia_equolifaciens_DSM_19450 0
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_fulvissimus_DSM_40593 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Propionibacterium_acidipropionici_ATCC_4875 1
Actinomyces_odontolyticus_ATCC_17982 0
Eubacterium_siraeum_V10Sc8a 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 1
Ruminococcus_champanellensis_18P13 3
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Desulfotomaculum_gibsoniae_DSM_7213 1
Clostridium_difficile_BI1 1
Clostridium_difficile_R20291 1
Clostridium_difficile_CD196 1
Clostridium_sp._SY8519 1
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_kluyveri_NBRC_12016 2
Clostridium_tetani_genome_12124569 1
Clostridium_botulinum_H04402_065 2
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_B1_str._Okra 2
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 2
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Carnobacterium_maltaromaticum_LMA28 0
Enterococcus_mundtii_QU_25 6
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_V583 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Lactobacillus_amylovorus_GRL_1112 1
Lactobacillus_plantarum_16 6
Lactobacillus_plantarum_ZJ316 4
Lactobacillus_plantarum_subsp._plantarum_ST-III 3
Lactobacillus_plantarum_subsp._plantarum_P-8 3
Lactobacillus_plantarum_WCFS1 5
Lactobacillus_brevis_KB290 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1
Lactococcus_lactis_subsp._lactis_IO-1 1
Lactococcus_lactis_subsp._lactis_CV56 1
Lactococcus_lactis_subsp._lactis_Il1403 1
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_anginosus_C238 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_dysgalactiae_subsp._equisimilis_167 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_iniae_SF1 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 1
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_2-22 1
Streptococcus_agalactiae_GD201008-001 1
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_suis_T15 0
Streptococcus_suis_TL13 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Streptococcus_suis_ST1 1
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 1
Streptococcus_suis_05ZYH33 0
Listeria_monocytogenes_EGD_sequence 3
Listeria_monocytogenes_serotype_4b_str._LL195 9
Listeria_monocytogenes_07PF0776 6
Listeria_monocytogenes_M7 2
Listeria_monocytogenes_J1-220 10
Listeria_monocytogenes_J1816 10
Listeria_monocytogenes_SLCC2376 5
Listeria_monocytogenes_SLCC5850 3
Listeria_monocytogenes_ATCC_19117 10
Listeria_monocytogenes_L312 11
Listeria_monocytogenes_SLCC2479 4
Listeria_monocytogenes_SLCC7179 3
Listeria_monocytogenes_SLCC2540 12
Listeria_monocytogenes_SLCC2378 9
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 10
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 3
Listeria_monocytogenes_serotype_7_str._SLCC2482 7
Listeria_monocytogenes_08-5578 4
Listeria_monocytogenes_08-5923 4
Listeria_monocytogenes_L99 2
Listeria_monocytogenes_HCC23 2
Listeria_monocytogenes_10403S 3
Listeria_monocytogenes_J0161 5
Listeria_monocytogenes_Finland_1998 3
Listeria_monocytogenes_FSL_R2-561 4
Listeria_monocytogenes_serotype_4b_str._F2365 10
Listeria_monocytogenes_EGD-e 4
Prevotella_sp._oral_taxon_299_str._F0039 4
Prevotella_dentalis_DSM_3688 5
Porphyromonas_gingivalis_TDC60 2
Porphyromonas_gingivalis_W83 2
Alistipes_shahii_WAL_8301 3
Bacteroides_xylanisolvens_XB1A 4
Bacteroides_fragilis_638R 3
Bacteroides_fragilis_NCTC_9343 1
Nonlabens_dokdonensis_DSW-6 2
Riemerella_anatipestifer_RA-CH-2 1
Riemerella_anatipestifer_RA-CH-1 1
Riemerella_anatipestifer_RA-GD 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Treponema_pedis_str._T_A4 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Sorangium_cellulosum_So0157-2 2
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_GMI1000 1
Leisingera_methylohalidivorans_DSM_14336 1
Sinorhizobium_fredii_USDA_257 1
Sinorhizobium_fredii_HH103 2
Bradyrhizobium_japonicum_USDA_6 2
Xanthomonas_citri_subsp._citri_Aw12879 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 2
Yersinia_pseudotuberculosis_IP_32953 2
Yersinia_pestis_biovar_Microtus_str._91001 2
Yersinia_pestis_A1122 2
Yersinia_pestis_Z176003 3
Yersinia_pestis_D182038 3
Yersinia_pestis_D106004 3
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 3
Yersinia_pestis_Nepal516 2
Yersinia_pestis_Antiqua 2
Yersinia_pestis_CO92 3
Yersinia_pestis_KIM10+ 2
Shigella_sonnei_53G 5
Shigella_flexneri_2002017 7
Shigella_flexneri_2a_str._2457T 2
Shigella_flexneri_2a_str._301 6
Shigella_dysenteriae_1617 4
Shigella_boydii_Sb227 7
Salmonella_bongori_N268-08 3
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 5
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 2
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 2
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 2
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 2
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 2
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Escherichia_coli_E24377A 1
Escherichia_coli_LY180 1
Escherichia_coli_O7:K1_str._CE10 2
Escherichia_coli_042 3
Escherichia_coli_Xuzhou21 1
Escherichia_coli_KO11FL 1
Escherichia_coli_KO11FL 1
Escherichia_coli_IAI39 2
Escherichia_coli_UMN026 3
Escherichia_coli_W 1
Escherichia_coli_W 1
Escherichia_coli_SMS-3-5 3
Escherichia_coli_SE11 1
Escherichia_coli_HS 1
Escherichia_coli_O55:H7_str._RM12579 2
Escherichia_coli_O55:H7_str._CB9615 2
Escherichia_coli_O157:H7_str._TW14359 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Pseudomonas_monteilii_SB3101 6
Pseudomonas_monteilii_SB3078 6
Pseudomonas_putida_H8234 4
Pseudomonas_putida_HB3267 6
Pseudomonas_putida_NBRC_14164 4
Pseudomonas_putida_DOT-T1E 6
Pseudomonas_putida_S16 5
Pseudomonas_putida_BIRD-1 6
Pseudomonas_putida_W619 5
Pseudomonas_putida_ND6 5
Pseudomonas_putida_KT2440 6
Pseudomonas_putida_GB-1 5
Pseudomonas_poae_RE*1-1-14 3
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 4
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 2
Methanolobus_psychrophilus_R15 0
Methanosarcina_mazei_Tuc01 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   28
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22
Gorilla_gorilla_69_3.1   (Western gorilla)   23
Pongo_abelii_69_2   (Sumatran orangutan)   18
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   15
Macaca_mulatta_69_1   (Rhesus monkey)   25
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   23
Otolemur_garnettii_69_3   (Small-eared galago)   21
Microcebus_murinus_69_1   (Gray mouse lemur)   17
Rattus_norvegicus_69_3.4   (Norway rat)   22
Mus_musculus_69_38   (House mouse)   25
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   17
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   22
Cavia_porcellus_69_3   (Domestic guinea pig)   29
Oryctolagus_cuniculus_69_2   (Rabbit)   21
Ochotona_princeps_69   (American pika)   18
Tupaia_belangeri_69   (Northern tree shrew)   19
Sus_scrofa_69_10.2   (Pig)   21
Bos_taurus_69_3.1   (Cattle)   22
Vicugna_pacos_69_1   (Alpaca)   15
Tursiops_truncatus_69_1   (Bottlenose dolphin)   22
Mustela_putorius_furo_69_1.0   (Domestic ferret)   24
Ailuropoda_melanoleuca_69_1   (Giant panda)   19
Canis_familiaris_69_3.1   (Dog)   20
Felis_catus_69   (Domestic cat)   12
Equus_caballus_69_2   (Horse)   19
Myotis_lucifugus_69_2.0   (Little brown bat)   23
Pteropus_vampyrus_69_1   (Large flying fox)   16
Sorex_araneus_69_1   (European shrew)   12
Erinaceus_europaeus_69   (Western European hedgehog)   17
Procavia_capensis_69_1   (Cape rock hyrax)   15
Loxodonta_africana_69_3   (African savanna elephant)   27
Echinops_telfairi_69   (Small Madagascar hedgehog)   15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   16
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   11
Macropus_eugenii_69_1.0   (Tammar wallaby)   14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   19
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   17
Ornithorhynchus_anatinus_69_5   (Platypus)   10
Petromyzon_marinus_69_7.0   (Sea lamprey)   5
Meleagris_gallopavo_69_2   (Turkey)   16
Gallus_gallus_69_2   (Chicken)   16
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   20
Anolis_carolinensis_69_2.0   (Green anole)   18
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   16
Latimeria_chalumnae_69_1   (Coelacanth)   22
Gadus_morhua_69_1   (Atlantic cod)   14
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   16
Takifugu_rubripes_69_4   (Torafugu)   20
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   24
Oryzias_latipes_69_1   (Japanese medaka)   16
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   26
Oreochromis_niloticus_69_1.0   (Nile tilapia)   26
Danio_rerio_69_9   (Zebrafish)   26
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   7
Drosophila_melanogaster_69_5   (Fruit fly)   30
Caenorhabditis_elegans_69_215   (Roundworm)   14
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   40

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   61
Homo_sapiens__(NCBI_version)   (Human)   34
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   26
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   11
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 33
Malus_x_domestica_(Duplicate)   (Apple)   147
Ricinus_communis__(Early_assembly)   (Castor bean)   29
Nicotiana_benthamiana_0.4.4_(Early_draft) 74
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   35
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   36
Phoenix_dactylifera__(Early_draft)   (Date palm)   10
Acholeplasma_laidlawii_PG-8A_(duplicate) 1
NCBI_plasmid_sequences_(Plasmids) 58
UniProt__viral_sequences_(Viral) 7
Protozoadb_2010_08_(Protozoadb) 521
STRING_v9.0.5_(STRING) 2291
TargetDB__(Targets) 68
Uniprot_2018_03_genome 133855
Protein_Data_Bank_(all_PDB_sequenc) 50
NCBI_2017_08_genome 56254
NCBI_viral_sequences_(Viral) 71
PDB_chains_(SCOP_1.75)_(PDB) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 31

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