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Domain combinations for _gap_,52087,48350 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52087 - CRAL/TRIO domain
48350 - GTPase activation domain, GAP

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   1
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   2
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Saccoglossus_kowalevskii_v3.0 1
Meleagris_gallopavo_76_2   (Turkey)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   2
Xenopus_laevis_   (African clawed frog)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Adineta_vaga 2
Crassostrea_gigas_22   (Pacific oyster)   1
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 1
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   1
Pristionchus_pacificus_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_brenneri_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   2
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Mucor_circinelloides_ 1
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Coniophora_puteana 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Gloeophyllum_trabeumv1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Fomitiporia_mediterranea_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 1
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Dichomitus_squalens 0
Trametes_versicolor_v1.0 0
Leptosphaeria_maculans_22 0
Mycosphaerella_graminicola_IPO323_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Dictyostelium_discoideum 1
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   2
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   2
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   2
Bos_taurus_69_3.1   (Cattle)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6
Homo_sapiens__(NCBI_version)   (Human)   2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Loa_loa_v3.3_(Request)   (Eye worm)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Protozoadb_2010_08_(Protozoadb) 2
STRING_v9.0.5_(STRING) 52
Uniprot_2018_03_genome 2706
TargetDB__(Targets) 2
NCBI_2017_08_genome 827

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